MethylSeqData

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see MethylSeqData.

Collection of Public DNA Methylation Sequencing Datasets

Bioconductor version: 3.12

Base-level (i.e. cytosine-level) counts for a collection of public bisulfite-seq datasets (e.g., WGBS and RRBS), provided as SummarizedExperiment objects with sample- and base-level metadata.

Author: Peter Hickey [aut, cre]

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("MethylSeqData")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MethylSeqData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethylSeqData")

User's Guide	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylSeqData, Mus_musculus_Data, SequencingData
Version	1.0.0
License	CC0
Depends	SummarizedExperiment
Imports	ExperimentHub, HDF5Array, rhdf5, GenomeInfoDb, S4Vectors, GenomicRanges, stats, IRanges, utils
System Requirements
URL

Suggests	BiocFileCache, BiocStyle, data.table, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MethylSeqData_1.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/MethylSeqData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MethylSeqData
Package Short Url	https://bioconductor.org/packages/MethylSeqData/
Package Downloads Report	Download Stats