Changes in version 1.11.1                        

  - replace all class by is.

                        Changes in version 1.9.2                        

  - Update citation.
  - Update trimPeaks.R to filter peaks using adjusted pvalues and
    trimmed peaks by removing windows with zscore < 1.696

                        Changes in version 1.9.1                        

  - Add citation.

                        Changes in version 1.7.4                        

  - Fix the warning of documentation of computeLibSizeChrom.

                        Changes in version 1.7.1                        

  - Update author email.

                        Changes in version 1.5.4                        

  - Fix the warning of documentation in windows with missing link.

                        Changes in version 1.5.3                        

  - add BiocManager into suggest package.

                       Changes in version 1.3.13                        

  - add tileCount2.

                       Changes in version 1.3.12                        

  - update callPeaks.

                       Changes in version 1.3.11                        

  - update documentation of NADfinder.

                       Changes in version 1.3.10                        

  - Update the callPeaks.
  - Fix typo of nucleolus.

                        Changes in version 1.3.9                        

  - Fix the warning in windows for the help files.

                        Changes in version 1.3.8                        

  - update the documentation of tileCount, log2se and trimPeaks

                        Changes in version 1.3.5                        

  - Speed up tileCount per Herve's recommendation
  - Add Herve Pages as a coauthor
  - resave triplicate.count and single.count

                        Changes in version 1.3.3                        

  - Fix the warning in windows for the help files.
  - Add Haibo Liu as a coauthor.
  - Add different methods for transformation and combining p-values.

                        Changes in version 1.3.1                        

  - remove Bessel's correction for zscore calculation
  - narrow the distance when trim the peaks to avoid overlaps.
  - change the baseline.modpolyfit from degree 4 to degree 3.

                        Changes in version 1.1.2                        

  - update the documentations.

                        Changes in version 1.1.1                        

  - add parameter in backgroundCorrection.

                       Changes in version 0.99.4                        

  - replace slidingWindows by GenomicRanges::slidingWindows

                       Changes in version 0.99.3                        

  - add new function cumulativePercentage
  - add DNASeq, PeakDetection to biocViews.
  - update documentations of vignette by provide a narrative better
    explaining use of the package.
  - indicate argument type for each parameter in the documentations.
  - use vectorized rather than iteractive operations in place of other
    uses of apply()
  - use seq_len and seq_along to replace :

                       Changes in version 0.99.2                        

  - change GRanges to RangedSummarizedExperiment
  - update documentations
  - change plotCorrelations to getCorrelations
  - change sig2bedgraph to exportSignals
  - change tileGRanges to slidingWindows

                       Changes in version 0.99.1                        

  - change NEWS to NEWS.md
  - add details to README.md
  - update documentations

                       Changes in version 0.99.0                        

  - update the version to 0.99.0

                        Changes in version 0.1.4                        

  - add new function plotSig

                        Changes in version 0.1.3                        

  - add new function plotCorrelations

                        Changes in version 0.1.2                        

  - add new authors.

                        Changes in version 0.1.1                        

  - add the power to analyze duplicates.

                        Changes in version 0.1.0                        

  - Create the package.