semisup
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see semisup.
Semi-Supervised Mixture Model
Bioconductor version: 3.12
Implements a parametric semi-supervised mixture model. The permutation test detects markers with main or interactive effects, without distinguishing them. Possible applications include genome-wide association analysis and differential expression analysis.
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <armin.rauschenberger at uni.lu>
citation("semisup")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("semisup")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("semisup")| article frame | HTML | |
| vignette frame | HTML | |
| vignette source | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, Clustering, DNASeq, Genetics, GenomicVariation, Microarray, MultipleComparison, SNP, Software, SomaticMutation |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | GPL-3 |
| Depends | R (>= 3.0.0) |
| Imports | VGAM |
| System Requirements | |
| URL | https://github.com/rauschenberger/semisup |
| Bug Reports | https://github.com/rauschenberger/semisup/issues |
See More
| Suggests | knitr, testthat, SummarizedExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | semisup_1.14.0.tar.gz |
| Windows Binary | semisup_1.14.0.zip |
| macOS 10.13 (High Sierra) | semisup_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/semisup |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/semisup |
| Bioc Package Browser | https://code.bioconductor.org/browse/semisup/ |
| Package Short Url | https://bioconductor.org/packages/semisup/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |