metaSeq
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see metaSeq.
Meta-analysis of RNA-Seq count data in multiple studies
Bioconductor version: 3.12
The probabilities by one-sided NOISeq are combined by Fisher's method or Stouffer's method
Author: Koki Tsuyuzaki, Itoshi Nikaido
Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>
Citation (from within R, enter
citation("metaSeq")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("metaSeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metaSeq")| metaSeq | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.13.0), NOISeq, snow, Rcpp |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | metaSeq_1.30.0.tar.gz |
| Windows Binary | metaSeq_1.30.0.zip |
| macOS 10.13 (High Sierra) | metaSeq_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/metaSeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/metaSeq |
| Bioc Package Browser | https://code.bioconductor.org/browse/metaSeq/ |
| Package Short Url | https://bioconductor.org/packages/metaSeq/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |