SELEX
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see SELEX.
Functions for analyzing SELEX-seq data
Bioconductor version: 3.12
Tools for quantifying DNA binding specificities based on SELEX-seq data.
Author: Chaitanya Rastogi, Dahong Liu, Lucas Melo, and Harmen J. Bussemaker
Maintainer: Harmen J. Bussemaker <hjb2004 at columbia.edu>
Citation (from within R, enter
citation("SELEX")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SELEX")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SELEX")| Motif Discovery with SELEX-seq | R Script | |
| Reference Manual |
Details
| biocViews | GeneRegulation, MotifAnnotation, MotifDiscovery, Software, Transcription |
| Version | 1.22.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | GPL (>=2) |
| Depends | rJava (>= 0.5-0), Biostrings(>= 2.26.0) |
| Imports | stats, utils |
| System Requirements | Java (>= 1.5) |
| URL | https://bussemakerlab.org/site/software/ |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SELEX_1.22.0.tar.gz |
| Windows Binary | SELEX_1.22.0.zip |
| macOS 10.13 (High Sierra) | SELEX_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SELEX |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SELEX |
| Bioc Package Browser | https://code.bioconductor.org/browse/SELEX/ |
| Package Short Url | https://bioconductor.org/packages/SELEX/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |