Rcwl
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see Rcwl.
An R interface to the Common Workflow Language
Bioconductor version: 3.12
The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.
Author: Qiang Hu [aut, cre], Qian Liu [aut]
Maintainer: Qiang Hu <qiang.hu at roswellpark.org>
citation("Rcwl")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rcwl")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rcwl")| User Guide for Rcwl | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ImmunoOncology, Software, WorkflowStep |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-2 | file LICENSE |
| Depends | R (>= 3.6), yaml, methods, S4Vectors |
| Imports | utils, stats, BiocParallel, batchtools, DiagrammeR, shiny, R.utils, codetools |
| System Requirements | python (>= 2.7), cwltool (>= 1.0.2018) |
| URL |
See More
| Suggests | testthat, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | RcwlPipelines |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rcwl_1.6.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | Rcwl_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rcwl |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rcwl |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rcwl/ |
| Package Short Url | https://bioconductor.org/packages/Rcwl/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |