Informeasure
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see Informeasure.
R implementation of Information measures
Bioconductor version: 3.12
This package compiles most information measures currently available: mutual information, conditional mutual information, interaction information, partial information decomposition and part mutual information. Using gene expression profile data, all these estimators can be employed to quantify nonlinear dependence between variables in biological regulatory network inference. The first estimator is used to infer bivariate network while the last four estimators are dedicated to analyze trivariate networks.
Author: Chu Pan [aut, cre]
Maintainer: Chu Pan <chu.pan at hnu.edu.cn>
citation("Informeasure")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Informeasure")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Informeasure")| Informeasure: a tool to quantify non-linear dependence between variables in biological regulatory networks from an information theory perspective | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, Network, NetworkInference, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.0) |
| Imports | entropy, matrixStats |
| System Requirements | |
| URL | https://github.com/chupan1218/Informeasure |
| Bug Reports | https://github.com/chupan1218/Informeasure/issues |
See More
| Suggests | knitr, rmarkdown, testthat, SummarizedExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Informeasure_1.0.0.tar.gz |
| Windows Binary | Informeasure_1.0.0.zip |
| macOS 10.13 (High Sierra) | Informeasure_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Informeasure |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Informeasure |
| Bioc Package Browser | https://code.bioconductor.org/browse/Informeasure/ |
| Package Short Url | https://bioconductor.org/packages/Informeasure/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |