HPAanalyze
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see HPAanalyze.
Retrieve and analyze data from the Human Protein Atlas
Bioconductor version: 3.12
Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data.
Author: Anh Nhat Tran [aut, cre]
Maintainer: Anh Nhat Tran <trannhatanh89 at gmail.com>
Citation (from within R, enter
citation("HPAanalyze")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HPAanalyze")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HPAanalyze")| 1. HPAanalyze quick start guide: Acquire and visualize the Human Protein Atlas (HPA) data in one function | HTML | R Script |
| 2. HPAanalyze in-depth: Working with Human Protein Atlas (HPA) data in R | HTML | R Script |
| 3. HPAanalyze use case: Combine with your Human Protein Atlas (HPA) queries | HTML | R Script |
| 4. HPAanalyze use case: Working with Human Protein Atlas (HPA) xml files offline | HTML | R Script |
| 5. HPAanalyze use case: Export Human Protein Atlas (HPA) data as JSON | HTML | R Script |
| 6. HPAanalyze use case: Download histology images from the Human Protein Atlas | HTML | R Script |
| 99. Code for figures from HPAanalyze paper | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | CellBiology, Proteomics, Software, Visualization |
| Version | 1.8.1 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 3.5.0) |
| Imports | dplyr, openxlsx, ggplot2, tibble, xml2, stats, utils, gridExtra |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, devtools, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HPAanalyze_1.8.1.tar.gz |
| Windows Binary | HPAanalyze_1.8.1.zip |
| macOS 10.13 (High Sierra) | HPAanalyze_1.8.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/HPAanalyze |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HPAanalyze |
| Bioc Package Browser | https://code.bioconductor.org/browse/HPAanalyze/ |
| Package Short Url | https://bioconductor.org/packages/HPAanalyze/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |