Class EmblId


  • public class EmblId
    extends java.lang.Object
    This class contains the processed data of embl file Primary accession number Sequence version number Topology: 'circular' or 'linear' Molecule type Data class Taxonomic division Sequence length
    Since:
    5.0.0
    Author:
    Noor Aldeen Al Mbaidin
    • Constructor Summary

      Constructors 
      Constructor Description
      EmblId​(java.lang.String primaryAccession, java.lang.String sequenceVersion, java.lang.String topology, java.lang.String moleculeType, java.lang.String dataClass, java.lang.String taxonomicDivision, java.lang.String sequenceLength)  
    • Constructor Detail

      • EmblId

        public EmblId​(java.lang.String primaryAccession,
                      java.lang.String sequenceVersion,
                      java.lang.String topology,
                      java.lang.String moleculeType,
                      java.lang.String dataClass,
                      java.lang.String taxonomicDivision,
                      java.lang.String sequenceLength)
    • Method Detail

      • getPrimaryAccession

        public java.lang.String getPrimaryAccession()
        Returns:
        String
      • getSequenceVersion

        public java.lang.String getSequenceVersion()
        return the sequence version
        Returns:
        String
      • getTopology

        public java.lang.String getTopology()
      • getMoleculeType

        public java.lang.String getMoleculeType()
        Molecule type this represents the type of molecule as stored
        Returns:
        String
      • getDataClass

        public java.lang.String getDataClass()
      • getTaxonomicDivision

        public java.lang.String getTaxonomicDivision()
        Returns:
        String
      • getSequenceLength

        public java.lang.String getSequenceLength()
        Sequence length The last item on the ID line is the length of the sequence (the total number of bases in the sequence). This number includes base positions reported as present but undetermined (coded as "N").
        Returns:
        String