Class SmithWatermanUserArgumentProcessor.SmithWatermanStartupParams

    • Constructor Detail

      • SmithWatermanStartupParams

        public SmithWatermanStartupParams()
    • Method Detail

      • getGapOpen

        public short getGapOpen()
      • setGapOpen

        public void setGapOpen​(short gapOpen)
      • getGapExtend

        public short getGapExtend()
      • setGapExtend

        public void setGapExtend​(short gapExtend)
      • getMaxRmsd

        public double getMaxRmsd()
      • setMaxRmsd

        public void setMaxRmsd​(double maxRmsd)
      • getMinLen

        public int getMinLen()
      • setMinLen

        public void setMinLen​(int minLen)