Class FastaGeneWriter


  • public class FastaGeneWriter
    extends java.lang.Object
    A Gene sequence has a Positive or Negative Strand where we want to write out to a stream the 5 to 3 prime version. It is also an option to write out the gene sequence where the exon regions are upper case 6/22/2010 FastaWriter needs to be sequence aware to handle writing out a GeneSequence which is negative Strand with the proper sequence
    Author:
    Scooter Willis
    • Method Detail

      • process

        public void process()
                     throws java.lang.Exception
        Throws:
        java.lang.Exception
      • getLineLength

        public int getLineLength()
        Returns:
        the lineLength
      • setLineLength

        public void setLineLength​(int lineLength)
        Parameters:
        lineLength - the lineLength to set
      • main

        public static void main​(java.lang.String[] args)