Class BlastResult
- java.lang.Object
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- org.biojava.nbio.core.search.io.Result
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- org.biojava.nbio.core.search.io.blast.BlastResult
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- All Implemented Interfaces:
java.lang.Iterable<Hit>
public class BlastResult extends Result
This class models a Blast/Blast plus result. You will find one of this for every query sequence specified in the run. Designed by Paolo Pavan. You may want to find my contacts on Github and LinkedIn for code info or discuss major changes. https://github.com/paolopavan- Author:
- Paolo Pavan
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Constructor Summary
Constructors Constructor Description BlastResult(java.lang.String program, java.lang.String version, java.lang.String reference, java.lang.String dbFile, java.util.HashMap<java.lang.String,java.lang.String> programSpecificParameters, int iterationNumber, java.lang.String queryID, java.lang.String queryDef, int queryLength, java.util.List<Hit> hits, Sequence querySequence)
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Method Summary
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Methods inherited from class org.biojava.nbio.core.search.io.Result
equals, getDbFile, getHitCounter, getIterationNumber, getProgram, getProgramSpecificParameter, getProgramSpecificParametersList, getQueryDef, getQueryID, getQueryLength, getQuerySequence, getReference, getVersion, hashCode, iterator
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Constructor Detail
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BlastResult
public BlastResult(java.lang.String program, java.lang.String version, java.lang.String reference, java.lang.String dbFile, java.util.HashMap<java.lang.String,java.lang.String> programSpecificParameters, int iterationNumber, java.lang.String queryID, java.lang.String queryDef, int queryLength, java.util.List<Hit> hits, Sequence querySequence)
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