Uses of Class
org.jcolorbrewer.ColorBrewer
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Packages that use ColorBrewer Package Description org.biojava.nbio.structure.align.gui.jmol Utility methods for better interaction with Jmol.org.jcolorbrewer org.jcolorbrewer.ui -
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Uses of ColorBrewer in org.biojava.nbio.structure.align.gui.jmol
Fields in org.biojava.nbio.structure.align.gui.jmol declared as ColorBrewer Modifier and Type Field Description protected ColorBrewer
AbstractAlignmentJmol. colorPalette
Methods in org.biojava.nbio.structure.align.gui.jmol that return ColorBrewer Modifier and Type Method Description ColorBrewer
AbstractAlignmentJmol. getColorPalette()
Return the color pattelete of the AlignmentJmol instance.Methods in org.biojava.nbio.structure.align.gui.jmol with parameters of type ColorBrewer Modifier and Type Method Description static java.lang.String
MultipleAlignmentJmol. getJmolString(MultipleAlignment multAln, java.util.List<Atom[]> transformedAtoms, ColorBrewer colorPalette, boolean colorByBlocks)
Generate a Jmol command String that colors the aligned residues of every structure.static java.lang.String
MultipleAlignmentJmol. getMultiBlockJmolString(MultipleAlignment multAln, java.util.List<Atom[]> transformedAtoms, ColorBrewer colorPalette, boolean colorByBlocks)
Colors every Block of the structures with a different color, following the palette. -
Uses of ColorBrewer in org.jcolorbrewer
Methods in org.jcolorbrewer that return ColorBrewer Modifier and Type Method Description static ColorBrewer[]
ColorBrewer. getDivergingColorPalettes(boolean colorBlindSave)
static ColorBrewer[]
ColorBrewer. getQualitativeColorPalettes(boolean colorBlindSave)
static ColorBrewer[]
ColorBrewer. getSequentialColorPalettes(boolean colorBlindSave)
static ColorBrewer
ColorBrewer. valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.static ColorBrewer[]
ColorBrewer. values()
Returns an array containing the constants of this enum type, in the order they are declared. -
Uses of ColorBrewer in org.jcolorbrewer.ui
Fields in org.jcolorbrewer.ui declared as ColorBrewer Modifier and Type Field Description protected ColorBrewer
ColorPaletteChooserDialog. startingColorBrewer
Starting color, set by setColor, and the color we return to on a reset.Methods in org.jcolorbrewer.ui that return ColorBrewer Modifier and Type Method Description ColorBrewer
ColorPanelSelectionModel. getColorBrewer()
ColorBrewer
ColorPaletteChooserDialog. getColorPalette()
Get the current color in the color chooser.Methods in org.jcolorbrewer.ui with parameters of type ColorBrewer Modifier and Type Method Description protected javax.swing.JToggleButton
DivergingColorPalettePanel. createPalette(ColorBrewer brewer, javax.swing.border.Border normalBorder)
protected javax.swing.JToggleButton
QualitativeColorPalettePanel. createPalette(ColorBrewer brewer, javax.swing.border.Border normalBorder)
protected javax.swing.JToggleButton
SequentialColorPalettePanel. createPalette(ColorBrewer brewer, javax.swing.border.Border normalBorder)
void
ColorPaletteChooserDialog. setColorBrewer(ColorBrewer brewer)
Set the current color in the color chooser.void
ColorPanelSelectionModel. setColorBrewer(ColorBrewer brewer)
Constructors in org.jcolorbrewer.ui with parameters of type ColorBrewer Constructor Description PaletteIcon(ColorBrewer brewer, int colorCount, int width, int height)
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