Package org.forester.ws.seqdb
Class UniProtTaxonomy
- java.lang.Object
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- org.forester.ws.seqdb.UniProtTaxonomy
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public final class UniProtTaxonomy extends java.lang.Object
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Constructor Summary
Constructors Constructor Description UniProtTaxonomy(java.lang.String line)
UniProtTaxonomy(java.util.List<java.lang.String> lineage, java.lang.String code, java.lang.String common_name, java.lang.String scientific_name, java.lang.String synonym, java.lang.String rank, java.lang.String id)
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description UniProtTaxonomy
copy()
Creates deep copy for all fields, except lineage.static UniProtTaxonomy
createSpecialFromScientificName(java.lang.String sn)
java.lang.String
getCode()
java.lang.String
getCommonName()
java.lang.String
getId()
java.util.List<java.lang.String>
getLineage()
java.lang.String
getRank()
java.lang.String
getScientificName()
java.lang.String
getSynonym()
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Field Detail
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ARCHAEA
public static final java.lang.String ARCHAEA
- See Also:
- Constant Field Values
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BACTERIA
public static final java.lang.String BACTERIA
- See Also:
- Constant Field Values
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EUKARYOTA
public static final java.lang.String EUKARYOTA
- See Also:
- Constant Field Values
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CELLULAR_ORGANISMS
public static final java.lang.String CELLULAR_ORGANISMS
- See Also:
- Constant Field Values
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VIRUSES
public static final java.lang.String VIRUSES
- See Also:
- Constant Field Values
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X
public static final java.lang.String X
- See Also:
- Constant Field Values
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Constructor Detail
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UniProtTaxonomy
public UniProtTaxonomy(java.lang.String line)
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UniProtTaxonomy
public UniProtTaxonomy(java.util.List<java.lang.String> lineage, java.lang.String code, java.lang.String common_name, java.lang.String scientific_name, java.lang.String synonym, java.lang.String rank, java.lang.String id)
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Method Detail
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copy
public UniProtTaxonomy copy()
Creates deep copy for all fields, except lineage.- Returns:
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getCode
public java.lang.String getCode()
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getCommonName
public java.lang.String getCommonName()
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getId
public java.lang.String getId()
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getLineage
public java.util.List<java.lang.String> getLineage()
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getRank
public java.lang.String getRank()
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getScientificName
public java.lang.String getScientificName()
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getSynonym
public java.lang.String getSynonym()
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createSpecialFromScientificName
public static final UniProtTaxonomy createSpecialFromScientificName(java.lang.String sn)
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