Analysis of minor alleles in Illumina sequencing data of viral
genomes. Functions in 'vivaldi' primarily operate on vcf files.
| Version: |
1.0.1 |
| Depends: |
R (≥ 2.10) |
| Imports: |
dplyr (≥ 1.0.2), ggplot2 (≥ 3.3.2), glue (≥ 1.4.2), magrittr (≥ 2.0.1), plotly (≥ 4.10.0), seqinr (≥ 4.2-8), tidyr (≥ 1.1.2), tidyselect (≥ 1.1.2), vcfR (≥ 1.12.0) |
| Suggests: |
kableExtra, knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: |
2023-03-21 |
| DOI: |
10.32614/CRAN.package.vivaldi |
| Author: |
Marissa Knoll [aut],
Katherine Johnson [aut],
Megan Hockman [aut],
Eric Borenstein [aut],
Mohammed Khalfan [aut],
Elodie Ghedin [aut],
David Gresham [aut, cre, cph] |
| Maintainer: |
David Gresham <dg107 at nyu.edu> |
| BugReports: |
https://github.com/GreshamLab/vivaldi/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/GreshamLab/vivaldi |
| NeedsCompilation: |
no |
| Citation: |
vivaldi citation info |
| Materials: |
README |
| CRAN checks: |
vivaldi results |