## ---- include = FALSE--------------------------------------------------------- NOT_CRAN <- identical(tolower(Sys.getenv("NOT_CRAN")), "true") knitr::opts_chunk$set( collapse = TRUE, comment = "#>", eval = NOT_CRAN ) ## ----setup-------------------------------------------------------------------- library(starsTileServer) ## ----download, eval=FALSE----------------------------------------------------- # require(ecmwfr) # request <- # list( # "dataset_short_name" = "reanalysis-era5-pressure-levels", # "product_type" = "reanalysis", # "variable" = c("temperature", "geopotential", "u_component_of_wind", "v_component_of_wind"), # "pressure_level" = c("875", "900", "925"), # "year" = "2000", # "month" = "04", # "day" = as.character(27:29), # "time" = sprintf("%02i:00", 0:23), # "area" = "64/-130/-64/144", # "format" = "netcdf", # "target" = "ecmwfData.nc" # ) # # make sure you use your own uid and key ( https://cds.climate.copernicus.eu/#!/home ) # wf_set_key("uid_to_replace", "key_to_replace", service = "cds") # ncfile <- wf_request( # user = "uid_to_replace", # request = request, # transfer = TRUE, # path = "~", # verbose = FALSE # ) ## ---- echo=F------------------------------------------------------------------ if (!file.exists(tmpGridFile <- "~/ownCloudUva/test.nc")) { tmpGridFile <- tempfile(fileext = ".nc") download.file("https://surfdrive.surf.nl/files/index.php/s/Z6YoTyzyyAsmgGS/download", tmpGridFile, extra = "-q", method = "wget") } ## ----stars-------------------------------------------------------------------- weatherData <- stars::read_stars(tmpGridFile) sf::st_crs(weatherData) <- "+proj=longlat" colFun <- function(x, alpha = 1, max = 20, min = -20) { paste0( suppressWarnings(leaflet::colorNumeric( "RdYlBu", domain = c(as.numeric(min), as.numeric(max)) )(x)), as.character(as.raw(as.numeric(alpha) * 255)) ) } attr(colFun, "colorType") <- "numeric" ## ----stards------------------------------------------------------------------- # note the process is ran in the background, do not forget to close it as it might use quite a bit of memory. # I have made the experience that callr seems to work poorly if the process is rather verbose require(callr) rp <- r_bg(args = list(grid = weatherData, colFun = colFun), function(grid, colFun) { starsTileServer::starsTileServer$new(grid, colFun)$run(port = 3746, docs = TRUE) }) ## ----startupPause, echo=F----------------------------------------------------- Sys.sleep(3) stopifnot(rp$is_alive()) ## ----asdr--------------------------------------------------------------------- message(rp$read_error()) ## ----app, echo=TRUE----------------------------------------------------------- require(shiny) require(leaflet) require(stars) weather <- stars::read_stars(tmpGridFile, proxy = T) ui <- fluidPage( # Application title titlePanel("Web map"), sidebarLayout( # Sidebar with a slider input sidebarPanel( sliderInput("alpha", "Transparancy", 0, 1, .6, .01), selectInput("attr", "Attribute", choices = c("u", "v")), sliderInput( "time", "Time", value = min(st_get_dimension_values(weather, 4)), min = min(st_get_dimension_values(weather, 4)), max = max(st_get_dimension_values(weather, 4)), step = 3600, timezone = "+0000", animate = animationOptions(5000) ), selectInput("level", "level (mb)", choices = as.character(st_get_dimension_values(weather, 3))), sliderInput("colRange", "Range", -50, 50, c(-20, 20)) ), # Show a plot of the generated distribution mainPanel(leafletOutput("map")) ) ) ## ----adpp, echo=TRUE---------------------------------------------------------- server <- function(input, output, session) { # This reactive creates the URL to the tileserver, it include the different input variables in requests to the server # The debounce ensures the URL does not get updated to frequent url <- reactive({ sprintf( "http://127.0.0.1:3746/map/%s/{z}/{x}/{y}?level=%s&alpha=%f&time=%s&min=%f&max=%f", input$attr, input$level, input$alpha, strftime(input$time, tz = "UTC", format = "%Y-%m-%d %H:%M:%S"), min(input$colRange), max(input$colRange) ) }) %>% debounce(100) # This reactive downloads the color function from the server and prepares it for adding as a legend to the leaflet map colorFunction <- reactive({ f <- readRDS(base::url(sprintf("http://127.0.0.1:3746/map/%s/colorfunctionnoalpha", input$attr))) at <- attributes(f) if (is.finite(max(colrange()))) { formals(f)$max <- max(colrange()) } if (is.finite(min(colrange()))) { formals(f)$min <- min(colrange()) } attributes(f) <- at f }) colrange <- reactive(range(input$colRange)) output$map <- renderLeaflet({ leaflet() %>% addTiles() %>% fitBounds(-50, -30, 50, 50) }) # This observer changes the tile layer as soon as the url is updated observe({ leafletProxy("map") %>% clearGroup("wind") %>% addTiles(url(), group = "wind", options = tileOptions(useCache = TRUE, crossOrigin = TRUE) ) }) # This observe changes the legend as soon as it is updated observe({ s <- seq(min(colrange()), max(colrange()), length.out = 20) leafletProxy("map") %>% clearControls() %>% addLegend( pal = colorFunction(), values = s, title = input$attr, position = "bottomleft" ) }) } ## ----asdfrr------------------------------------------------------------------- app <- shinyApp(ui, server) ## ----appimage, echo=FALSE----------------------------------------------------- f <- tempfile(fileext = ".png") suppressMessages(webshot::appshot( app, file = f, delay = 45, vwidth = 1000, vheight = 600 )) magick::image_read(f) ## ----result------------------------------------------------------------------- rp$finalize()