Last updated on 2025-12-20 11:50:33 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 6.90 | 70.73 | 77.63 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 4.46 | 50.92 | 55.38 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 12.00 | 113.62 | 125.62 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 12.00 | 121.47 | 133.47 | ERROR | |
| r-devel-windows-x86_64 | 1.0.0 | 9.00 | 102.00 | 111.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 7.75 | 92.62 | 100.37 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 6.83 | 93.18 | 100.01 | OK | |
| r-release-macos-arm64 | 1.0.0 | OK | ||||
| r-release-macos-x86_64 | 1.0.0 | 4.00 | 81.00 | 85.00 | OK | |
| r-release-windows-x86_64 | 1.0.0 | 10.00 | 99.00 | 109.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.0 | 4.00 | 64.00 | 68.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.0 | 13.00 | 129.00 | 142.00 | OK |
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘ptable-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: modify_cnt_ptable
> ### Title: Modify a ptable suitable for frequency count variables
> ### Aliases: modify_cnt_ptable modify_cnts_ptable
>
> ### ** Examples
>
> # Original ptable
> ptab <- create_cnt_ptable(3, 1)
Error in `[.data.table`(dt, , `:=`(p_int_ub, cumsum(p)), by = list(i)) :
attempt access index 7/7 in VECTOR_ELT
Calls: create_cnt_ptable ... create_ptable -> pt_create_pTable -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ptable)
Attaching package: 'ptable'
The following object is masked from 'package:graphics':
plot
The following object is masked from 'package:base':
plot
>
> test_check("ptable")
Saving _problems/test-examples-31.R
Saving _problems/test-functions-2.R
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Row 2: original frequency i = 1
-------------------------------
j1 01234
j2 01234
v -10123
i_char 1
j_char 01234
v_char -10123
i 1
j 01234
p_init 00000
p_lb 0.000000010.000000010.000000010.000000010.00000001
p_ub 11111
pstay 000
epsilon 0.00000001
p_new:0.3698821778733170.3698821778733170.1710603991401490.0687039566064850.0204712885067327
$p_mean
[,1]
[1,] 0
$p_var
[,1]
[1,] 1
$p_sum
[1] 1
$p_stay
[1] 0.36988218
Variable 1 - Iter 1
check_var: FALSE
check_pstay: TRUE
p_lb for p_stay: 0.00000001
Sum of p: 0
Saving _problems/test-params-121.R
Saving _problems/test-params-152.R
Saving _problems/test-params-157.R
Saving _problems/test-params-159.R
Saving _problems/test-params-163.R
Saving _problems/test-params-168.R
Saving _problems/test-params-169.R
Saving _problems/test-params-192.R
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 31 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-examples.R:10:3'): Example is correct ──────────────────────────
Error in ``[.data.table`(dt, , `:=`(p_int_ub, cumsum(p)), by = list(i))`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-examples.R:10:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─ptable::pt_ex_cnts()
5. └─ptable::create_cnt_ptable(...)
6. └─ptable::create_ptable(...)
7. └─ptable:::pt_create_pTable(...)
8. ├─dt[, `:=`(p_int_ub, cumsum(p)), by = list(i)]
9. └─data.table:::`[.data.table`(...)
── Error ('test-functions.R:2:1'): (code run outside of `test_that()`) ─────────
Error in ``[.data.table`(dt, , `:=`(p_int_ub, cumsum(p)), by = list(i))`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─ptable::create_cnt_ptable(D = 3, V = 1) at test-functions.R:2:1
2. └─ptable::create_ptable(...)
3. └─ptable:::pt_create_pTable(...)
4. ├─dt[, `:=`(p_int_ub, cumsum(p)), by = list(i)]
5. └─data.table:::`[.data.table`(...)
── Failure ('test-params.R:117:3'): pt_create_pTable() is ok ───────────────────
Expected `pt_create_pTable(params = para1, debugging = TRUE, monitoring = TRUE)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:148:3'): modify_cnt_ptable() is ok ──────────────────
Expected `modify_cnt_ptable(...)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:153:3'): modify_cnt_ptable() is ok ──────────────────
Expected `modify_cnt_ptable(...)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:159:3'): modify_cnt_ptable() is ok ──────────────────
Expected `modify_cnt_ptable(ck_ptab_cnts, threshold = 0.1, seed = 123)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Error ('test-params.R:162:3'): modify_cnt_ptable() is ok ────────────────────
Error in ``[.data.table`(dt, , `:=`(p_int_ub, cumsum(p)), by = list(i))`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-params.R:162:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─ptable::modify_cnt_ptable(pt_create_pTable(para1), 0.3, seed = 5467)
8. └─ptable:::pt_create_pTable(para1)
9. ├─dt[, `:=`(p_int_ub, cumsum(p)), by = list(i)]
10. └─data.table:::`[.data.table`(...)
── Failure ('test-params.R:168:3'): Testing different optim settings ───────────
Expected `create_cnt_ptable(D = 3, V = 1, optim = 2)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:169:3'): Testing different optim settings ───────────
Expected `create_cnt_ptable(D = 3, V = 1, optim = 3)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:192:13'): Testing if only ptable_params-class is generated and imported again ──
Expected `create_ptable(params = para2)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 31 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from introduction.Rmd:77-81 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 7/7 in VECTOR_ELT
---
Backtrace:
▆
1. └─ptable::create_cnt_ptable(D = 2, V = 1)
2. └─ptable::create_ptable(...)
3. └─ptable:::pt_create_pTable(...)
4. ├─dt[, `:=`(p_int_ub, cumsum(p)), by = list(i)]
5. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
attempt access index 7/7 in VECTOR_ELT
--- failed re-building ‘introduction.Rmd’
SUMMARY: processing the following file failed:
‘introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ptable)
Attaching package: 'ptable'
The following object is masked from 'package:graphics':
plot
The following object is masked from 'package:base':
plot
>
> test_check("ptable")
Saving _problems/test-examples-31.R
Saving _problems/test-functions-2.R
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Row 2: original frequency i = 1
-------------------------------
j1 01234
j2 01234
v -10123
i_char 1
j_char 01234
v_char -10123
i 1
j 01234
p_init 00000
p_lb 0.000000010.000000010.000000010.000000010.00000001
p_ub 11111
pstay 000
epsilon 0.00000001
p_new:0.3698821778733170.3698821778733170.1710603991401490.0687039566064850.0204712885067327
$p_mean
[,1]
[1,] 0
$p_var
[,1]
[1,] 1
$p_sum
[1] 1
$p_stay
[1] 0.36988218
Variable 1 - Iter 1
check_var: FALSE
check_pstay: TRUE
p_lb for p_stay: 0.00000001
Sum of p: 0
Saving _problems/test-params-121.R
Saving _problems/test-params-152.R
Saving _problems/test-params-157.R
Saving _problems/test-params-159.R
Saving _problems/test-params-163.R
Saving _problems/test-params-168.R
Saving _problems/test-params-169.R
Saving _problems/test-params-192.R
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 31 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-examples.R:10:3'): Example is correct ──────────────────────────
Error in ``[.data.table`(dt, , `:=`(p_int_ub, cumsum(p)), by = list(i))`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-examples.R:10:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─ptable::pt_ex_cnts()
5. └─ptable::create_cnt_ptable(...)
6. └─ptable::create_ptable(...)
7. └─ptable:::pt_create_pTable(...)
8. ├─dt[, `:=`(p_int_ub, cumsum(p)), by = list(i)]
9. └─data.table:::`[.data.table`(...)
── Error ('test-functions.R:2:1'): (code run outside of `test_that()`) ─────────
Error in ``[.data.table`(dt, , `:=`(p_int_ub, cumsum(p)), by = list(i))`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─ptable::create_cnt_ptable(D = 3, V = 1) at test-functions.R:2:1
2. └─ptable::create_ptable(...)
3. └─ptable:::pt_create_pTable(...)
4. ├─dt[, `:=`(p_int_ub, cumsum(p)), by = list(i)]
5. └─data.table:::`[.data.table`(...)
── Failure ('test-params.R:117:3'): pt_create_pTable() is ok ───────────────────
Expected `pt_create_pTable(params = para1, debugging = TRUE, monitoring = TRUE)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:148:3'): modify_cnt_ptable() is ok ──────────────────
Expected `modify_cnt_ptable(...)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:153:3'): modify_cnt_ptable() is ok ──────────────────
Expected `modify_cnt_ptable(...)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:159:3'): modify_cnt_ptable() is ok ──────────────────
Expected `modify_cnt_ptable(ck_ptab_cnts, threshold = 0.1, seed = 123)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Error ('test-params.R:162:3'): modify_cnt_ptable() is ok ────────────────────
Error in ``[.data.table`(dt, , `:=`(p_int_ub, cumsum(p)), by = list(i))`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-params.R:162:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─ptable::modify_cnt_ptable(pt_create_pTable(para1), 0.3, seed = 5467)
8. └─ptable:::pt_create_pTable(para1)
9. ├─dt[, `:=`(p_int_ub, cumsum(p)), by = list(i)]
10. └─data.table:::`[.data.table`(...)
── Failure ('test-params.R:168:3'): Testing different optim settings ───────────
Expected `create_cnt_ptable(D = 3, V = 1, optim = 2)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:169:3'): Testing different optim settings ───────────
Expected `create_cnt_ptable(D = 3, V = 1, optim = 3)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:192:13'): Testing if only ptable_params-class is generated and imported again ──
Expected `create_ptable(params = para2)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 31 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘ptable-Ex.R’ failed
The error most likely occurred in:
> ### Name: modify_cnt_ptable
> ### Title: Modify a ptable suitable for frequency count variables
> ### Aliases: modify_cnt_ptable modify_cnts_ptable
>
> ### ** Examples
>
> # Original ptable
> ptab <- create_cnt_ptable(3, 1)
Error in `[.data.table`(dt, , `:=`(p_int_ub, cumsum(p)), by = list(i)) :
attempt access index 7/7 in VECTOR_ELT
Calls: create_cnt_ptable ... create_ptable -> pt_create_pTable -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ptable)
Attaching package: 'ptable'
The following object is masked from 'package:graphics':
plot
The following object is masked from 'package:base':
plot
>
> test_check("ptable")
Saving _problems/test-examples-31.R
Saving _problems/test-functions-2.R
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Row 2: original frequency i = 1
-------------------------------
j1 01234
j2 01234
v -10123
i_char 1
j_char 01234
v_char -10123
i 1
j 01234
p_init 00000
p_lb 0.000000010.000000010.000000010.000000010.00000001
p_ub 11111
pstay 000
epsilon 0.00000001
p_new:0.3698821778733170.3698821778733170.1710603991401490.0687039566064850.0204712885067327
$p_mean
[,1]
[1,] 0
$p_var
[,1]
[1,] 1
$p_sum
[1] 1
$p_stay
[1] 0.36988218
Variable 1 - Iter 1
check_var: FALSE
check_pstay: TRUE
p_lb for p_stay: 0.00000001
Sum of p: 0
Saving _problems/test-params-121.R
Saving _problems/test-params-152.R
Saving _problems/test-params-157.R
Saving _problems/test-params-159.R
Saving _problems/test-params-163.R
Saving _problems/test-params-168.R
Saving _problems/test-params-169.R
Saving _problems/test-params-192.R
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 31 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-examples.R:10:3'): Example is correct ──────────────────────────
Error in ``[.data.table`(dt, , `:=`(p_int_ub, cumsum(p)), by = list(i))`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-examples.R:10:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─ptable::pt_ex_cnts()
5. └─ptable::create_cnt_ptable(...)
6. └─ptable::create_ptable(...)
7. └─ptable:::pt_create_pTable(...)
8. ├─dt[, `:=`(p_int_ub, cumsum(p)), by = list(i)]
9. └─data.table:::`[.data.table`(...)
── Error ('test-functions.R:2:1'): (code run outside of `test_that()`) ─────────
Error in ``[.data.table`(dt, , `:=`(p_int_ub, cumsum(p)), by = list(i))`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─ptable::create_cnt_ptable(D = 3, V = 1) at test-functions.R:2:1
2. └─ptable::create_ptable(...)
3. └─ptable:::pt_create_pTable(...)
4. ├─dt[, `:=`(p_int_ub, cumsum(p)), by = list(i)]
5. └─data.table:::`[.data.table`(...)
── Failure ('test-params.R:117:3'): pt_create_pTable() is ok ───────────────────
Expected `pt_create_pTable(params = para1, debugging = TRUE, monitoring = TRUE)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:148:3'): modify_cnt_ptable() is ok ──────────────────
Expected `modify_cnt_ptable(...)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:153:3'): modify_cnt_ptable() is ok ──────────────────
Expected `modify_cnt_ptable(...)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:159:3'): modify_cnt_ptable() is ok ──────────────────
Expected `modify_cnt_ptable(ck_ptab_cnts, threshold = 0.1, seed = 123)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Error ('test-params.R:162:3'): modify_cnt_ptable() is ok ────────────────────
Error in ``[.data.table`(dt, , `:=`(p_int_ub, cumsum(p)), by = list(i))`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-params.R:162:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─ptable::modify_cnt_ptable(pt_create_pTable(para1), 0.3, seed = 5467)
8. └─ptable:::pt_create_pTable(para1)
9. ├─dt[, `:=`(p_int_ub, cumsum(p)), by = list(i)]
10. └─data.table:::`[.data.table`(...)
── Failure ('test-params.R:168:3'): Testing different optim settings ───────────
Expected `create_cnt_ptable(D = 3, V = 1, optim = 2)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:169:3'): Testing different optim settings ───────────
Expected `create_cnt_ptable(D = 3, V = 1, optim = 3)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:192:13'): Testing if only ptable_params-class is generated and imported again ──
Expected `create_ptable(params = para2)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 31 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from introduction.Rmd:77-81 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 7/7 in VECTOR_ELT
---
Backtrace:
▆
1. └─ptable::create_cnt_ptable(D = 2, V = 1)
2. └─ptable::create_ptable(...)
3. └─ptable:::pt_create_pTable(...)
4. ├─dt[, `:=`(p_int_ub, cumsum(p)), by = list(i)]
5. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
attempt access index 7/7 in VECTOR_ELT
--- failed re-building ‘introduction.Rmd’
SUMMARY: processing the following file failed:
‘introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ptable)
Attaching package: 'ptable'
The following object is masked from 'package:graphics':
plot
The following object is masked from 'package:base':
plot
>
> test_check("ptable")
Saving _problems/test-examples-31.R
Saving _problems/test-functions-2.R
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Ignoring argument `step` for freqency tables
Row 2: original frequency i = 1
-------------------------------
j1 01234
j2 01234
v -10123
i_char 1
j_char 01234
v_char -10123
i 1
j 01234
p_init 00000
p_lb 0.000000010.000000010.000000010.000000010.00000001
p_ub 11111
pstay 000
epsilon 0.00000001
p_new:0.3698821778733170.3698821778733170.1710603991401490.0687039566064850.0204712885067327
$p_mean
[,1]
[1,] 0
$p_var
[,1]
[1,] 1
$p_sum
[1] 1
$p_stay
[1] 0.36988218
Variable 1 - Iter 1
check_var: FALSE
check_pstay: TRUE
p_lb for p_stay: 0.00000001
Sum of p: 0
Saving _problems/test-params-121.R
Saving _problems/test-params-152.R
Saving _problems/test-params-157.R
Saving _problems/test-params-159.R
Saving _problems/test-params-163.R
Saving _problems/test-params-168.R
Saving _problems/test-params-169.R
Saving _problems/test-params-192.R
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 31 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-examples.R:10:3'): Example is correct ──────────────────────────
Error in ``[.data.table`(dt, , `:=`(p_int_ub, cumsum(p)), by = list(i))`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-examples.R:10:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─ptable::pt_ex_cnts()
5. └─ptable::create_cnt_ptable(...)
6. └─ptable::create_ptable(...)
7. └─ptable:::pt_create_pTable(...)
8. ├─dt[, `:=`(p_int_ub, cumsum(p)), by = list(i)]
9. └─data.table:::`[.data.table`(...)
── Error ('test-functions.R:2:1'): (code run outside of `test_that()`) ─────────
Error in ``[.data.table`(dt, , `:=`(p_int_ub, cumsum(p)), by = list(i))`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─ptable::create_cnt_ptable(D = 3, V = 1) at test-functions.R:2:1
2. └─ptable::create_ptable(...)
3. └─ptable:::pt_create_pTable(...)
4. ├─dt[, `:=`(p_int_ub, cumsum(p)), by = list(i)]
5. └─data.table:::`[.data.table`(...)
── Failure ('test-params.R:117:3'): pt_create_pTable() is ok ───────────────────
Expected `pt_create_pTable(params = para1, debugging = TRUE, monitoring = TRUE)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:148:3'): modify_cnt_ptable() is ok ──────────────────
Expected `modify_cnt_ptable(...)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:153:3'): modify_cnt_ptable() is ok ──────────────────
Expected `modify_cnt_ptable(...)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:159:3'): modify_cnt_ptable() is ok ──────────────────
Expected `modify_cnt_ptable(ck_ptab_cnts, threshold = 0.1, seed = 123)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Error ('test-params.R:162:3'): modify_cnt_ptable() is ok ────────────────────
Error in ``[.data.table`(dt, , `:=`(p_int_ub, cumsum(p)), by = list(i))`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-params.R:162:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─ptable::modify_cnt_ptable(pt_create_pTable(para1), 0.3, seed = 5467)
8. └─ptable:::pt_create_pTable(para1)
9. ├─dt[, `:=`(p_int_ub, cumsum(p)), by = list(i)]
10. └─data.table:::`[.data.table`(...)
── Failure ('test-params.R:168:3'): Testing different optim settings ───────────
Expected `create_cnt_ptable(D = 3, V = 1, optim = 2)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:169:3'): Testing different optim settings ───────────
Expected `create_cnt_ptable(D = 3, V = 1, optim = 3)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
── Failure ('test-params.R:192:13'): Testing if only ptable_params-class is generated and imported again ──
Expected `create_ptable(params = para2)` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 7/7 in VECTOR_ELT
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 31 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc