Last updated on 2025-12-18 09:50:22 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 13 | ||
| mlr | 2 | 11 | |
| mlr3pipelines | 3 | 10 | |
| paradox | 13 | ||
| ParamHelpers | 13 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 3, OK: 10
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [100s/49s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1]
> test_multiplicities.R: 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-17 05:50:27.688288: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:27.688546: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:27.692067: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:27.698472: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:27.709814: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:27.709949: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:27.712255: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:27.718254: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:27.72473: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:27.724916: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:27.737902: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:27.753103: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:27.753627: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:27.760424: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:27.760558: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:27.76481: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:27.779837: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:27.780276: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:27.800288: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:27.800434: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.009506: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.044414: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.052477: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.052678: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.061455: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.139735: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:28.140837: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:28.16967: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.169786: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.172129: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.178093: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.184565: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.184732: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.189161: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.204652: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:28.205061: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:28.235121: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.235276: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.237713: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.243896: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.254611: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.254794: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.259445: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.274459: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:28.274847: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:28.293697: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.293855: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.301592: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.307623: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.318237: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.31841: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.323046: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.338695: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:28.339127: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:28.355895: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.35603: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.358403: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.365068: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.374334: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.374479: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.378443: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.391406: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:28.391675: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:28.405026: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.405126: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.40717: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.412407: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.42051: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.420638: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.424436: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.438548: embedding
> test_pipeop_isomap.R: 2025-12-17 05:50:28.439176: DONE
> test_pipeop_isomap.R: 2025-12-17 05:50:28.459115: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.459246: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.461657: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.468012: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.48637: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.486524: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.493017: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.498242: Classical Scaling
> test_pipeop_isomap.R: 2025-12-17 05:50:28.502284: Isomap START
> test_pipeop_isomap.R: 2025-12-17 05:50:28.502364: constructing knn graph
> test_pipeop_isomap.R: 2025-12-17 05:50:28.504179: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-17 05:50:28.509547: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [299s/269s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-18 02:58:34.704447: Isomap START
> test_pipeop_isomap.R: 2025-12-18 02:58:34.704988: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:34.724017: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:34.763094: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 02:58:34.833965: Isomap START
> test_pipeop_isomap.R: 2025-12-18 02:58:34.834265: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:34.858793: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:34.904857: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 02:58:34.943665: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 02:58:34.944088: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:34.979488: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:35.052401: embedding
> test_pipeop_isomap.R: 2025-12-18 02:58:35.053518: DONE
> test_pipeop_isomap.R: 2025-12-18 02:58:35.098555: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 02:58:35.103027: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:35.134734: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:35.216233: embedding
> test_pipeop_isomap.R: 2025-12-18 02:58:35.217781: DONE
> test_pipeop_isomap.R: 2025-12-18 02:58:35.397604: Isomap START
> test_pipeop_isomap.R: 2025-12-18 02:58:35.397893: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:35.421662: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:35.650401: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 02:58:35.700303: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 02:58:35.700741: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:36.498737: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:36.876932: embedding
> test_pipeop_isomap.R: 2025-12-18 02:58:36.881536: DONE
> test_pipeop_isomap.R: 2025-12-18 02:58:37.063009: Isomap START
> test_pipeop_isomap.R: 2025-12-18 02:58:37.06338: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:37.081306: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:37.142626: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 02:58:37.182535: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 02:58:37.18295: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:37.209475: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:37.280037: embedding
> test_pipeop_isomap.R: 2025-12-18 02:58:37.281198: DONE
> test_pipeop_isomap.R: 2025-12-18 02:58:37.44316: Isomap START
> test_pipeop_isomap.R: 2025-12-18 02:58:37.44346: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:37.456778: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:37.487962: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 02:58:37.558856: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 02:58:37.559279: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:37.597516: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:37.676266: embedding
> test_pipeop_isomap.R: 2025-12-18 02:58:37.677388: DONE
> test_pipeop_isomap.R: 2025-12-18 02:58:37.781263: Isomap START
> test_pipeop_isomap.R: 2025-12-18 02:58:37.781555: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:37.78809: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:37.818096: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 02:58:37.873048: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 02:58:37.873473: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:37.924504: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:37.997644: embedding
> test_pipeop_isomap.R: 2025-12-18 02:58:37.99872: DONE
> test_pipeop_isomap.R: 2025-12-18 02:58:38.081055: Isomap START
> test_pipeop_isomap.R: 2025-12-18 02:58:38.081378: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:38.0878: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:38.118513: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 02:58:38.198957: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 02:58:38.199385: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:38.224724: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:38.287213: embedding
> test_pipeop_isomap.R: 2025-12-18 02:58:38.288356: DONE
> test_pipeop_isomap.R: 2025-12-18 02:58:38.395193: Isomap START
> test_pipeop_isomap.R: 2025-12-18 02:58:38.395479: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:38.407212: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:38.442481: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 02:58:38.502243: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-18 02:58:38.502707: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:38.521726: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:38.5912: embedding
> test_pipeop_isomap.R: 2025-12-18 02:58:38.592339: DONE
> test_pipeop_isomap.R: 2025-12-18 02:58:38.723393: Isomap START
> test_pipeop_isomap.R: 2025-12-18 02:58:38.723678: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:38.732505: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:38.768549: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 02:58:38.870681: Isomap START
> test_pipeop_isomap.R: 2025-12-18 02:58:38.870983: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:38.877591: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:38.914764: Classical Scaling
> test_pipeop_isomap.R: 2025-12-18 02:58:38.944146: Isomap START
> test_pipeop_isomap.R: 2025-12-18 02:58:38.94444: constructing knn graph
> test_pipeop_isomap.R: 2025-12-18 02:58:38.97617: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-18 02:58:39.012562: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [265s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-15 08:40:24.001964: Isomap START
> test_pipeop_isomap.R: 2025-12-15 08:40:24.0031: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:24.019173: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:24.044316: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 08:40:24.114861: Isomap START
> test_pipeop_isomap.R: 2025-12-15 08:40:24.115526: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:24.127409: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:24.150299: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 08:40:24.189255: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 08:40:24.189936: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:24.213388: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:24.263855: embedding
> test_pipeop_isomap.R: 2025-12-15 08:40:24.26569: DONE
> test_pipeop_isomap.R: 2025-12-15 08:40:24.303771: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 08:40:24.304465: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:24.40646: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:24.45199: embedding
> test_pipeop_isomap.R: 2025-12-15 08:40:24.453635: DONE
> test_pipeop_isomap.R: 2025-12-15 08:40:24.574761: Isomap START
> test_pipeop_isomap.R: 2025-12-15 08:40:24.575391: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:24.594846: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:24.715687: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 08:40:24.762399: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 08:40:24.76326: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:24.803773: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:25.034062: embedding
> test_pipeop_isomap.R: 2025-12-15 08:40:25.039621: DONE
> test_pipeop_isomap.R: 2025-12-15 08:40:25.246603: Isomap START
> test_pipeop_isomap.R: 2025-12-15 08:40:25.24724: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:25.257379: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:25.279402: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 08:40:25.322786: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 08:40:25.323652: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:25.357486: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:25.405931: embedding
> test_pipeop_isomap.R: 2025-12-15 08:40:25.407758: DONE
> test_pipeop_isomap.R: 2025-12-15 08:40:25.598572: Isomap START
> test_pipeop_isomap.R: 2025-12-15 08:40:25.599252: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:25.609102: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:25.629679: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 08:40:25.69854: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 08:40:25.699476: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:26.24019: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:26.286812: embedding
> test_pipeop_isomap.R: 2025-12-15 08:40:26.288325: DONE
> test_pipeop_isomap.R: 2025-12-15 08:40:26.405129: Isomap START
> test_pipeop_isomap.R: 2025-12-15 08:40:26.405788: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:26.417375: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:26.439357: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 08:40:26.50688: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 08:40:26.507768: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:26.526779: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:26.576545: embedding
> test_pipeop_isomap.R: 2025-12-15 08:40:26.578374: DONE
> test_pipeop_isomap.R: 2025-12-15 08:40:26.665948: Isomap START
> test_pipeop_isomap.R: 2025-12-15 08:40:26.666399: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:26.67382: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:26.68888: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 08:40:26.75379: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 08:40:26.754636: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:26.773947: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:26.822289: embedding
> test_pipeop_isomap.R: 2025-12-15 08:40:26.824274: DONE
> test_pipeop_isomap.R: 2025-12-15 08:40:26.926376: Isomap START
> test_pipeop_isomap.R: 2025-12-15 08:40:26.927071: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:26.939285: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:26.961014: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 08:40:27.023772: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 08:40:27.024649: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:27.047719: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:27.095961: embedding
> test_pipeop_isomap.R: 2025-12-15 08:40:27.097851: DONE
> test_pipeop_isomap.R: 2025-12-15 08:40:27.220681: Isomap START
> test_pipeop_isomap.R: 2025-12-15 08:40:27.221372: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:27.234399: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:27.255501: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 08:40:27.357687: Isomap START
> test_pipeop_isomap.R: 2025-12-15 08:40:27.358418: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:27.371688: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:27.394745: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 08:40:27.452627: Isomap START
> test_pipeop_isomap.R: 2025-12-15 08:40:27.453397: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 08:40:27.464631: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 08:40:27.488324: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13