Package: DHARMa
Title: Residual Diagnostics for Hierarchical (Multi-Level / Mixed)
        Regression Models
Version: 0.4.7
Date: 2024-10-16
Authors@R: c(person("Florian", "Hartig", email = "florian.hartig@biologie.uni-regensburg.de", role = c("aut", "cre"), comment=c(ORCID="0000-0002-6255-9059")), person("Lukas", "Lohse", role = "ctb"), person("Melina", "de Souza leite", role = "ctb"))
Description: The 'DHARMa' package uses a simulation-based approach to create
    readily interpretable scaled (quantile) residuals for fitted (generalized) linear mixed
    models. Currently supported are linear and generalized linear (mixed) models from 'lme4'
    (classes 'lmerMod', 'glmerMod'), 'glmmTMB', 'GLMMadaptive', and 'spaMM'; phylogenetic 
    linear models from 'phylolm' (classes 'phylolm' and 'phyloglm'); generalized additive 
    models ('gam' from 'mgcv'); 'glm' (including 'negbin' from 'MASS', but excluding quasi-distributions) and
    'lm' model classes. Moreover, externally created simulations, e.g. posterior predictive simulations
    from Bayesian software such as 'JAGS', 'STAN', or 'BUGS' can be processed as well.
    The resulting residuals are standardized to values between 0 and 1 and can be interpreted
    as intuitively as residuals from a linear regression. The package also provides a number of
    plot and test functions for typical model misspecification problems, such as
    over/underdispersion, zero-inflation, and residual spatial, phylogenetic and temporal autocorrelation.
Depends: R (>= 3.0.2)
Imports: stats, graphics, utils, grDevices, Matrix, parallel, gap,
        lmtest, ape, qgam (>= 1.3.2), lme4
Suggests: knitr, testthat (>= 3.0.0), rmarkdown, KernSmooth, sfsmisc,
        MASS, mgcv, mgcViz (>= 0.1.9), spaMM (>= 3.2.0), GLMMadaptive,
        glmmTMB (>= 1.1.2.3), phylolm (>= 2.6.5)
Enhances: phyr, rstan, rjags, BayesianTools
License: GPL (>= 3)
URL: http://florianhartig.github.io/DHARMa/
LazyData: TRUE
BugReports: https://github.com/florianhartig/DHARMa/issues
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Encoding: UTF-8
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2024-10-17 17:47:16 UTC; melinaleite
Author: Florian Hartig [aut, cre] (<https://orcid.org/0000-0002-6255-9059>),
  Lukas Lohse [ctb],
  Melina de Souza leite [ctb]
Maintainer: Florian Hartig <florian.hartig@biologie.uni-regensburg.de>
Repository: CRAN
Date/Publication: 2024-10-18 11:10:22 UTC
Built: R 4.4.3; ; 2025-10-21 15:10:40 UTC; windows
