* using log directory 'd:/Rcompile/CRANpkg/local/4.6/rnpn.Rcheck' * using R Under development (unstable) (2025-07-21 r88439 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'rnpn/DESCRIPTION' ... OK * this is package 'rnpn' version '1.4.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'rnpn' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [2s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [15s] ERROR Running 'testthat.R' [15s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(rnpn) > > test_check("rnpn") Downloading... Downloading... Downloading... [ FAIL 21 | WARN 0 | SKIP 19 | PASS 11 ] ══ Skipped tests (19) ══════════════════════════════════════════════════════════ • On CRAN (19): 'test-npn-geoserver.R:4:3', 'test-npn-geoserver.R:16:3', 'test-npn-geoserver.R:41:3', 'test-npn-geoserver.R:81:3', 'test-npn-geoserver.R:105:3', 'test-npn-geoserver.R:127:3', 'test-npn-geoserver.R:146:3', 'test-npn-observations.R:8:3', 'test-npn-observations.R:183:3', 'test-npn-observations.R:224:3', 'test-npn-observations.R:268:3', 'test-npn-observations.R:333:3', 'test-npn-observations.R:401:3', 'test-npn-observations.R:470:3', 'test-npn-observations.R:539:3', 'test-npn-observations.R:593:3', 'test-npn-observations.R:645:3', 'test-npn-observations.R:731:3', 'test-npn-observations.R:840:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-npn-datasets.R:5:5'): datasets endpoint working ──────────────── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-datasets.R:4:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_datasets() at test-npn-datasets.R:5:5 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-get-species.R:5:5'): npn_species returns a data frame ────── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-get-species.R:4:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_species() at test-npn-get-species.R:5:5 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-get-species.R:19:5'): npn_species_id working ─────────────── Error in `httr2::resp_body_json(x, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-get-species.R:18:3 2. │ └─cassette$call_block(...) 3. ├─rnpn::npn_species_id(3) at test-npn-get-species.R:19:5 4. │ └─base::lapply(...) 5. │ └─rnpn (local) FUN(X[[i]], ...) 6. │ ├─httr2::resp_body_json(x, simplifyVector = TRUE) %>% tibble::as_tibble() 7. │ └─httr2::resp_body_json(x, simplifyVector = TRUE) 8. │ └─httr2::resp_check_content_type(...) 9. │ └─httr2:::check_content_type(...) 10. │ └─cli::cli_abort(...) 11. │ └─rlang::abort(...) 12. └─tibble::as_tibble(.) ── Error ('test-npn-get-species.R:30:5'): npn_species_state works ────────────── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-get-species.R:29:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_species_state("AZ") at test-npn-get-species.R:30:5 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-get-species.R:55:5'): npn_species_search works ───────────── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-get-species.R:54:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_species_search(start_date = "2023-01-01", end_date = "2023-05-15") at test-npn-get-species.R:55:5 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-get-species.R:81:5'): npn_species_types ──────────────────── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-get-species.R:80:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_species_types() at test-npn-get-species.R:81:5 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-observations.R:18:5'): npn_download_status_data() works ──── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-observations.R:17:3 2. │ └─cassette$call_block(...) 3. ├─rnpn::npn_download_status_data(...) at test-npn-observations.R:18:5 4. │ └─rnpn:::npn_get_data_by_year(...) 5. │ └─rnpn:::npn_get_data(...) 6. │ ├─httr2::resp_body_json(resp, simplifyVector = TRUE) %>% ... 7. │ └─httr2::resp_body_json(resp, simplifyVector = TRUE) 8. │ └─httr2::resp_check_content_type(...) 9. │ └─httr2:::check_content_type(...) 10. │ └─cli::cli_abort(...) 11. │ └─rlang::abort(...) 12. ├─rnpn (local) wrangle_dl_data(.) 13. │ └─... %>% ... 14. ├─dplyr::mutate(...) 15. ├─dplyr::mutate(...) 16. └─dplyr::mutate(...) ── Error ('test-npn-observations.R:52:5'): phenometrics downloads work ───────── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-observations.R:51:3 2. │ └─cassette$call_block(...) 3. ├─rnpn::npn_download_individual_phenometrics(...) at test-npn-observations.R:52:5 4. │ └─rnpn:::npn_get_data_by_year(...) 5. │ └─rnpn:::npn_get_data(...) 6. │ ├─httr2::resp_body_json(resp, simplifyVector = TRUE) %>% ... 7. │ └─httr2::resp_body_json(resp, simplifyVector = TRUE) 8. │ └─httr2::resp_check_content_type(...) 9. │ └─httr2:::check_content_type(...) 10. │ └─cli::cli_abort(...) 11. │ └─rlang::abort(...) 12. ├─rnpn (local) wrangle_dl_data(.) 13. │ └─... %>% ... 14. ├─dplyr::mutate(...) 15. ├─dplyr::mutate(...) 16. └─dplyr::mutate(...) ── Error ('test-npn-observations.R:139:5'): custom period works ──────────────── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-observations.R:138:3 2. │ └─cassette$call_block(...) 3. ├─rnpn::npn_download_individual_phenometrics(...) at test-npn-observations.R:139:5 4. │ └─rnpn:::npn_get_data_by_year(...) 5. │ └─rnpn:::npn_get_data(...) 6. │ ├─httr2::resp_body_json(resp, simplifyVector = TRUE) %>% ... 7. │ └─httr2::resp_body_json(resp, simplifyVector = TRUE) 8. │ └─httr2::resp_check_content_type(...) 9. │ └─httr2:::check_content_type(...) 10. │ └─cli::cli_abort(...) 11. │ └─rlang::abort(...) 12. ├─rnpn (local) wrangle_dl_data(.) 13. │ └─... %>% ... 14. ├─dplyr::mutate(...) 15. ├─dplyr::mutate(...) 16. └─dplyr::mutate(...) ── Error ('test-npn-partners.R:5:5'): npn_groups works ───────────────────────── Error in `httr2::resp_body_json(resp, simplifyVector = !use_hierarchy)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-partners.R:4:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_groups() at test-npn-partners.R:5:5 4. └─httr2::resp_body_json(resp, simplifyVector = !use_hierarchy) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-phenophases.R:5:5'): npn_phenophases works ───────────────── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-phenophases.R:4:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_phenophases() at test-npn-phenophases.R:5:5 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-phenophases.R:19:5'): npn_phenophase_definitions works ───── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-phenophases.R:18:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_phenophase_definitions() at test-npn-phenophases.R:19:5 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-phenophases.R:32:5'): npn_phenophase_details works ───────── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-phenophases.R:31:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_phenophase_details(56) at test-npn-phenophases.R:32:5 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-phenophases.R:53:5'): npn_phenophases_by_species works ───── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-phenophases.R:52:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_phenophases_by_species(species_ids = 3, date = "2018-05-05") at test-npn-phenophases.R:53:5 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-phenophases.R:64:5'): npn_pheno_classes works ────────────── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-phenophases.R:63:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_pheno_classes() at test-npn-phenophases.R:64:5 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-phenophases.R:76:5'): npn_abundance_categories works ─────── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-phenophases.R:75:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_abundance_categories() at test-npn-phenophases.R:76:5 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-phenophases.R:88:5'): npn_get_phenophases_for_taxon works ── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-phenophases.R:87:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_get_phenophases_for_taxon(class_ids = 5, date = "2018-05-05") at test-npn-phenophases.R:88:5 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-stations.R:5:5'): npn_stations functions ─────────────────── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-stations.R:4:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_stations() at test-npn-stations.R:5:5 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-stations.R:28:4'): npn_stations_by_state functions ───────── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-stations.R:27:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_stations_by_state() at test-npn-stations.R:28:4 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) ── Error ('test-npn-stations.R:41:5'): npn_stations_by_location functions ────── Error in `httr2::resp_body_json(., simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-stations.R:40:3 2. │ └─cassette$call_block(...) 3. ├─rnpn::npn_stations_by_location(wkt = "POLYGON((-110.94484396954107 32.23623109416672,-110.96166678448247 32.23594069208043,-110.95960684795904 32.21328646993733,-110.94244071026372 32.21343170728929,-110.93935080547857 32.23216538049456,-110.94484396954107 32.23623109416672))") at test-npn-stations.R:41:5 4. │ └─... %>% tibble::as_tibble() 5. ├─tibble::as_tibble(.) 6. └─httr2::resp_body_json(., simplifyVector = TRUE) 7. └─httr2::resp_check_content_type(...) 8. └─httr2:::check_content_type(...) 9. └─cli::cli_abort(...) 10. └─rlang::abort(...) ── Error ('test-npn-stations.R:55:5'): npn_stations_with_spp functions ───────── Error in `httr2::resp_body_json(resp, simplifyVector = TRUE)`: Unexpected content type "NA". * Expecting type "application/json" or suffix "json". Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-npn-stations.R:54:3 2. │ └─cassette$call_block(...) 3. └─rnpn::npn_stations_with_spp(100) at test-npn-stations.R:55:5 4. └─httr2::resp_body_json(resp, simplifyVector = TRUE) 5. └─httr2::resp_check_content_type(...) 6. └─httr2:::check_content_type(...) 7. └─cli::cli_abort(...) 8. └─rlang::abort(...) [ FAIL 21 | WARN 0 | SKIP 19 | PASS 11 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [8s] OK * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... [7s] OK * DONE Status: 1 ERROR