* using log directory 'd:/Rcompile/CRANpkg/local/4.6/EcoCleanR.Rcheck' * using R Under development (unstable) (2025-12-01 r89083 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'EcoCleanR/DESCRIPTION' ... OK * this is package 'EcoCleanR' version '1.0.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'EcoCleanR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [10s] OK * checking whether the package can be loaded with stated dependencies ... [9s] OK * checking whether the package can be unloaded cleanly ... [9s] OK * checking whether the namespace can be loaded with stated dependencies ... [8s] OK * checking whether the namespace can be unloaded cleanly ... [10s] OK * checking loading without being on the library search path ... [9s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [20s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [62s] ERROR Running examples in 'EcoCleanR-Ex.R' failed The error most likely occurred in: > ### Name: ec_worms_synonym > ### Title: Check Accepted Synonyms from WoRMs Taxonomy > ### Aliases: ec_worms_synonym > > ### ** Examples > > species_name <- "Mexacanthina lugubris" > data <- data.frame( + scientificName = "Mexacanthina lugubris", + decimalLongitude = c(-120, -78, -110, -60, -75, -130, -10, 5), + decimalLatitude = c(20, 34, 30, 10, 40, 25, 15, 35) + ) > comparison <- ec_worms_synonym(species_name, data, scientificName = "scientificName") ══ 1 queries ═══════════════ Retrieving data for taxon 'Mexacanthina lugubris' ✔ Found: Mexacanthina lugubris ══ Results ═════════════════ • Total: 1 • Found: 1 • Not Found: 0 Error in `dplyr::select()`: ! Can't select columns that don't exist. ✖ Column `scientificname` doesn't exist. Backtrace: ▆ 1. ├─EcoCleanR::ec_worms_synonym(species_name, data, scientificName = "scientificName") 2. │ ├─base::unique(dplyr::select(worms_syn_df, "scientificname")) 3. │ ├─dplyr::select(worms_syn_df, "scientificname") 4. │ └─dplyr:::select.data.frame(worms_syn_df, "scientificname") 5. │ └─tidyselect::eval_select(expr(c(...)), data = .data, error_call = error_call) 6. │ └─tidyselect:::eval_select_impl(...) 7. │ ├─tidyselect:::with_subscript_errors(...) 8. │ │ └─base::withCallingHandlers(...) 9. │ └─tidyselect:::vars_select_eval(...) 10. │ └─tidyselect:::walk_data_tree(expr, data_mask, context_mask) 11. │ └─tidyselect:::eval_c(expr, data_mask, context_mask) 12. │ └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init) 13. │ └─tidyselect:::walk_data_tree(new, data_mask, context_mask) 14. │ └─tidyselect:::as_indices_sel_impl(...) 15. │ └─tidyselect:::as_indices_impl(...) 16. │ └─tidyselect:::chr_as_locations(x, vars, call = call, arg = arg) 17. │ └─vctrs::vec_as_location(...) 18. └─vctrs (local) ``() 19. └─vctrs:::stop_subscript_oob(...) 20. └─vctrs:::stop_subscript(...) 21. └─rlang::abort(...) Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [189s] OK Running 'testthat.R' [189s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [57s] OK * checking PDF version of manual ... [19s] OK * checking HTML version of manual ... [7s] OK * DONE Status: 1 ERROR