addAlphaCol	addAlphaCol
bedToCoor	bedToCoor
buildControl	buildControl
buildKmerTable	buildKmerTable
buildMidPatternKmerTable	buildMidPatternKmerTable
buildRangedKmerTable	buildRangedKmerTable
buildRESTurl	buildRESTurl
calKmerSkew	calKmerSkew
calPWM	calPWM
catHeader	catHeader
Coordinate	Coordinate
countBaseComposition	countBaseComposition
countChoppedKmers	countChoppedKmers
countDistribution	countDistribution
countKmers	countKmers
countMidPatternContext2	countMidPatternContext2
countMidPatternKmers	countMidPatternKmers
countPointContext2	countPointContext2
countRangedKmers	countRangedKmers
countRevCompKmers	countRevCompKmers
countSlidingWindow	countSlidingWindow
countSlidingWindow2	countSlidingWindow2
count_substring_fixed	count_substring_fixed
count_substring_regex	count_substring_regex
downloadNCBIGenomes	downloadNCBIGenomes
downloadUCSCgenome	downloadUCSCgenome
example_genome_coor	example_genome_coor
example_kmeRtone_score	example_kmeRtone_score
EXPLORE	EXPLORE
extractKmers	extractKmers
generateGenicElementCoor	generateGenicElementCoor
generateIntergenicCoor	generateIntergenicCoor
getCOSMICauthURL	getCOSMICauthURL
getCOSMICcancerGeneCensus	getCOSMICcancerGeneCensus
getCOSMIClatestVersion	getCOSMIClatestVersion
getCOSMICmutantExport	getCOSMICmutantExport
getEnsemblData	getEnsemblData
getEnsemblRegionFeatures	getEnsemblRegionFeatures
getEnsemblVariantFeatures	getEnsemblVariantFeatures
getEnsemblVariantFeatures_serial	getEnsemblVariantFeatures_serial
getGnomADvariants	getGnomADvariants
getICTVvirusMetadataResource	getICTVvirusMetadataResource
getNCBIassemblySummary	getNCBIassemblySummary
getScores	getScores
getUCSCgenePredTable	getUCSCgenePredTable
getVCFmetainfo	getVCFmetainfo
initKmerTable	initKmerTable
kmeRtone	kmeRtone
Kmer_Table	Kmer_Table
loadCoordinate	loadCoordinate
loadGenome	loadGenome
loadGenomicContents	loadGenomicContents
mapKmers	mapKmers
mergeCoordinate	mergeCoordinate
mixColors	mixColors
NCBI_Genome	NCBI_Genome
partitionCoordinate	partitionCoordinate
persistentDownload	persistentDownload
readBED	readBED
readFASTA	readFASTA
readVCF	readVCF
readVCF2	readVCF2
removeRegion	removeRegion
reverseComplement	reverseComplement
SCORE	SCORE
scoreKmers	scoreKmers
selectGenomesForCrossSpeciesStudy	selectGenomesForCrossSpeciesStudy
selectRepresentativeFromASM	selectRepresentativeFromASM
simulatePopulation	simulatePopulation
splitFASTA	splitFASTA
STUDY_ACROSS_POPULATIONS	STUDY_ACROSS_POPULATIONS
STUDY_ACROSS_SPECIES	STUDY_ACROSS_SPECIES
STUDY_CANCER_GENES	STUDY_CANCER_GENES
STUDY_GENIC_ELEMENTS	STUDY_GENIC_ELEMENTS
system3	system3
trimCoordinate	trimCoordinate
UCSC_Genome	UCSC_Genome
writeBED	writeBED
writeFASTA	writeFASTA
writeVCF	writeVCF
