bin_curve	bin_curve
bin_vector	bin_vector
calc_delta_errors	calc_delta_errors
calc_emp_p	calc_emp_p
calc_m	calc_m
calc_p	calc_p
Cape	Cape-class
Cape-class	Cape-class
cape2mpp	cape2mpp
center_std	center_std
check_bad_markers	check_bad_markers
check_communities	check_communities
check_geno	check_geno
check_underscore	check_underscore
chunkV	chunkV
colors_from_values	colors_from_values
compare_markers	compare_markers
consec_pairs	consec_pairs
delete_underscore	delete_underscore
direct_influence	direct_influence
draw_pie	draw_pie
error_prop	error_prop
exp_color_fun	exp_color_fun
flatten_array	flatten_array
genome_wide_threshold_1D	genome_wide_threshold_1D
get_allele_colors	get_allele_colors
get_block_allele	get_block_allele
get_circle	get_circle
get_color	get_color
get_color2	get_color2
get_col_num	get_col_num
get_concent_circ	get_concent_circ
get_covar	get_covar
get_eigentraits	get_eigentraits
get_geno	get_geno
get_geno_dim	get_geno_dim
get_geno_with_covar	get_geno_with_covar
get_interaction_error	get_interaction_error
get_layout_mat	get_layout_mat
get_line	get_line
get_linearly_independent	get_linearly_independent
get_marker_chr	get_marker_chr
get_marker_covar	get_marker_covar
get_marker_idx	get_marker_idx
get_marker_location	get_marker_location
get_marker_name	get_marker_name
get_marker_num	get_marker_num
get_network	get_network
get_pairs_for_pairscan	get_pairs_for_pairscan
get_pheno	get_pheno
get_stats_multiallele	get_stats_multiallele
hist_pheno	hist_pheno
image_with_text	image_with_text
impute_missing_geno	impute_missing_geno
kinship	kinship
kin_adjust	kin_adjust
linkage_blocks_network	linkage_blocks_network
load_input_and_run_cape	load_input_and_run_cape
marker2covar	marker2covar
my_image_plot	my_image_plot
norm_pheno	norm_pheno
one_pairscan_parallel	one_pairscan_parallel
one_singlescanDO	one_singlescanDO
pairscan	pairscan
pairscan_kin	pairscan_kin
pairscan_noKin	pairscan_noKin
pairscan_null	pairscan_null
pairscan_null_kin	pairscan_null_kin
pair_matrix	pair_matrix
pheatmap_generate_breaks	pheatmap_generate_breaks
pheatmap_scale_colours	pheatmap_scale_colours
pheno2covar	pheno2covar
plink2cape	plink2cape
plot_bars	plot_bars
plot_effects	plot_effects
plot_full_network	plot_full_network
plot_int_heat	plot_int_heat
plot_lines	plot_lines
plot_network	plot_network
plot_pairscan	plot_pairscan
plot_pheno_cor	plot_pheno_cor
plot_points	plot_points
plot_singlescan	plot_singlescan
plot_svd	plot_svd
plot_trait_circ	plot_trait_circ
plot_variant_influences	plot_variant_influences
qnorm_pheno	qnorm_pheno
qtl2_to_cape	qtl2_to_cape
read_parameters	read_parameters
read_population	read_population
remove_ind	remove_ind
remove_kin_ind	remove_kin_ind
remove_markers	remove_markers
remove_missing_genotype_data	remove_missing_genotype_data
remove_unused_markers	remove_unused_markers
report_progress	report_progress
rotate_mat	rotate_mat
run_cape	run_cape
rz_transform	rz_transform
segment_region	segment_region
select_eigentraits	select_eigentraits
select_markers_for_pairscan	select_markers_for_pairscan
select_pheno	select_pheno
singlescan	singlescan
sort_by_then_by	sort_by_then_by
write_population	write_population
write_variant_influences	write_variant_influences
