# Generated by roxygen2: do not edit by hand

S3method(print,summary.nprcgenekeeprErr)
S3method(print,summary.nprcgenekeeprGV)
S3method(summary,nprcgenekeeprErr)
S3method(summary,nprcgenekeeprGV)
export(addAnimalsWithNoRelative)
export(addBackSecondParents)
export(addGenotype)
export(addIdRecords)
export(addParents)
export(addSexAndAgeToGroup)
export(addUIds)
export(alleleFreq)
export(assignAlleles)
export(calcA)
export(calcAge)
export(calcFE)
export(calcFEFG)
export(calcFG)
export(calcGU)
export(calcRetention)
export(calculateSexRatio)
export(checkChangedColsLst)
export(checkErrorLst)
export(checkGenotypeFile)
export(checkParentAge)
export(checkRequiredCols)
export(chooseAlleles)
export(chooseDate)
export(convertAncestry)
export(convertDate)
export(convertFromCenter)
export(convertRelationships)
export(convertSexCodes)
export(convertStatusCodes)
export(correctParentSex)
export(countFirstOrder)
export(countLoops)
export(createExampleFiles)
export(createPedTree)
export(create_wkbk)
export(dataframe2string)
export(filterKinMatrix)
export(filterPairs)
export(filterReport)
export(filterThreshold)
export(findGeneration)
export(findLoops)
export(findOffspring)
export(findPedigreeNumber)
export(fixColumnNames)
export(geneDrop)
export(getAncestors)
export(getAnimalsWithHighKinship)
export(getChangedColsTab)
export(getConfigFileName)
export(getCurrentAge)
export(getDateErrorsAndConvertDatesInPed)
export(getDatedFilename)
export(getDemographics)
export(getEmptyErrorLst)
export(getErrorTab)
export(getFocalAnimalPed)
export(getGVGenotype)
export(getGVPopulation)
export(getGenotypes)
export(getIdsWithOneParent)
export(getIncludeColumns)
export(getLkDirectAncestors)
export(getLkDirectRelatives)
export(getLogo)
export(getOffspring)
export(getParents)
export(getPedMaxAge)
export(getPedigree)
export(getPossibleCols)
export(getPotentialSires)
export(getProbandPedigree)
export(getPyramidAgeDist)
export(getPyramidPlot)
export(getRequiredCols)
export(getSiteInfo)
export(getTokenList)
export(getVersion)
export(get_and_or_list)
export(get_elapsed_time_str)
export(groupAddAssign)
export(hasBothParents)
export(hasGenotype)
export(headerDisplayNames)
export(is_valid_date_str)
export(kinMatrix2LongForm)
export(kinship)
export(makeCEPH)
export(makeExamplePedigreeFile)
export(makeRelationClassesTable)
export(mapIdsToObfuscated)
export(meanKinship)
export(obfuscateDate)
export(obfuscateId)
export(obfuscatePed)
export(offspringCounts)
export(qcStudbook)
export(rankSubjects)
export(removeDuplicates)
export(removeEarlyDates)
export(removePotentialSires)
export(removeUninformativeFounders)
export(removeUnknownAnimals)
export(reportGV)
export(runGeneKeepR)
export(saveDataframesAsFiles)
export(setExit)
export(setPopulation)
export(set_seed)
export(toCharacter)
export(trimPedigree)
export(withinIntegerRange)
import(Matrix)
import(futile.logger)
import(shiny)
importFrom(Rlabkey,labkey.selectRows)
importFrom(WriteXLS,WriteXLS)
importFrom(anytime,anytime)
importFrom(graphics,par)
importFrom(htmlTable,htmlTable)
importFrom(lubridate,as.duration)
importFrom(lubridate,day)
importFrom(lubridate,ddays)
importFrom(lubridate,duration)
importFrom(lubridate,dyears)
importFrom(lubridate,interval)
importFrom(lubridate,is.Date)
importFrom(lubridate,mdy)
importFrom(lubridate,month)
importFrom(lubridate,now)
importFrom(lubridate,today)
importFrom(lubridate,year)
importFrom(lubridate,ymd)
importFrom(plotrix,color.gradient)
importFrom(plotrix,pyramid.plot)
importFrom(readxl,excel_format)
importFrom(readxl,read_excel)
importFrom(stats,runif)
importFrom(stringi,stri_c)
importFrom(stringi,stri_detect_fixed)
importFrom(stringi,stri_detect_regex)
importFrom(stringi,stri_length)
importFrom(stringi,stri_pad_both)
importFrom(stringi,stri_replace_all_fixed)
importFrom(stringi,stri_replace_all_regex)
importFrom(stringi,stri_split_regex)
importFrom(stringi,stri_startswith_fixed)
importFrom(stringi,stri_sub)
importFrom(stringi,stri_trim_both)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,stack)
importFrom(utils,write.csv)
importFrom(utils,write.table)
