Population genetics package for designing diagnostic panels.
Candidate markers, marker combinations, and different panel sizes are
assessed for how well they can predict the source population of known
samples. Requires a genotype file of candidate markers in STRUCTURE format.
Methods for population cross-validation are described in Jombart (2008)
<doi:10.1093/bioinformatics/btn129>.
| Version: |
2.1.1 |
| Depends: |
R (≥ 2.10) |
| Imports: |
adegenet, doParallel, dplyr, forcats, foreach, ggplot2, graphics, magrittr, parallel, readr, tidyr, utils, withr, yaml |
| Suggests: |
testthat (≥ 3.0.0) |
| Published: |
2024-02-20 |
| DOI: |
10.32614/CRAN.package.snpAIMeR |
| Author: |
Kim Vertacnik 
[cre, aut],
Oksana Vernygora
[aut],
Julian Dupuis
[aut] |
| Maintainer: |
Kim Vertacnik <kim.vertacnik at mailbox.org> |
| Contact: |
Kim Vertacnik <kim.vertacnik@mailbox.org> or Julian Dupuis
<julian.dupuis@uky.edu> |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/OksanaVe/snpAIMeR |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
snpAIMeR results |