Help for package rblt

Type:

Package

Title:

Bio-Logging Toolbox

Version:

0.2.4.7

Description:

An R-shiny application to visualize bio-loggers time series at a microsecond precision as Acceleration, Temperature, Pressure, Light intensity. It is possible to link behavioral labels extracted from 'BORIS' software http://www.boris.unito.it or manually written in a csv file.

Maintainer:

Sebastien Geiger <sebastien.geiger@iphc.cnrs.fr>

License:

GPL (≥ 3)

Encoding:

UTF-8

RoxygenNote:

6.1.1

SystemRequirements:

libhdf5 (>= 1.8.12)

Depends:

R (≥ 3.2), hdf5r (≥ 1.0), data.table, xts, dygraphs, shiny, methods

Imports:

tools

URL:

https://github.com/sg4r/rblt

BugReports:

https://github.com/sg4r/rblt/issues

Suggests:

knitr, rmarkdown

VignetteBuilder:

knitr

NeedsCompilation:

Packaged:

2024-02-19 10:44:45 UTC; seb

Author:

Sebastien Geiger [aut, cre]

Repository:

CRAN

Date/Publication:

2024-02-19 13:20:03 UTC

A Logger reference class

Description

A Logger reference class

Fields

name: logger display name
fileh5: h5 data file name
filebehavior: behavior file name
besep: behavior field separator character
besaturation: the ‘saturation’ value from 0 to 1
uizoomstart: uizoomstart default value
uizoomend: uizoomend default value

Methods

behaviorinit(besep, besaturation)

init behavior list event

draw()

draw the objec value

Return Value

returns a String object representing the value

h5init()

verify if h5 is correct version

initmetriclst()

set metric list for this logger class

setextmatrix(m)

set external matrix

Author(s)

sebastien geiger

A LoggerAxytrek reference class

Description

A LoggerAxytrek reference class

Methods

draw()

draw the objec value

Return Value

returns a String object representing the value

h5init()

verify if h5 is correct version

initmetriclst()

set metric list for this logger class

A LoggerCats reference class

Description

A LoggerCats reference class

Methods

draw()

draw the objec value

Return Value

returns a String object representing the value

h5init()

verify if h5 is correct version

initmetriclst()

set metric list for this logger class

A LoggerData reference class

Description

A LoggerData reference class

Methods

draw()

draw the objec value

Return Value

returns a String object representing the value

h5init()

verify if h5 is correct version

initmetriclst()

set metric list for this logger class

A LoggerList reference class

Description

A LoggerList reference class

Methods

add(node)

add new node in the list.

draw()

draw the objec value

Return Value

returns a list of String object representing the value

A LoggerLul reference class

Description

A LoggerLul reference class

Methods

draw()

draw the objec value

Return Value

returns a String object representing the value

h5init()

verify if h5 is correct version

initmetriclst()

set metric list for this logger class

A LoggerUI reference class

Description

A LoggerUI reference class

Fields

loglst: list of logger class
id: id of curent loger view
ldatestart: curent start date
nbrow: courent row number
zoomhistory: history storage

Methods

gui(): plot logger list

A LoggerWacu reference class

Description

A LoggerWacu reference class

Methods

draw()

draw the objec value

Return Value

returns a String object representing the value

h5init()

verify if h5 is correct version

initmetriclst()

set metric list for this logger class

Metric reference class

Description

Metric reference class

Fields

name: title metric in chart
colid: start column id
connb: number of column for this metric

Methods

draw()

draw the objec value

Return Value

returns a String object representing the value

getmatrix(id)

get matrix of elements

MetricList reference class

Description

MetricList reference class

Methods

add(node)

add new node in the list.

draw()

draw the objec value

Return Value

returns a list of String object representing the value

get()

get all node from the list.

Return Value

returns a list of node

getat(id)

return element at id index.

Return Value

returns the node @ id

getcolactive()

get matrix col enable

getcolnames()

get matrix col name

getmatrix()

get matrix of elements

getsize()

return lenght of element.

Return Value

returns a non-negativ numeric

slctset(v)

enable or disable metric view

Parameters

v True or False vector

A OldLoggerUI reference class

Description

A OldLoggerUI reference class

A ZoomHistory reference class

Description

A ZoomHistory reference class

Methods

draw()

draw the objec value

Return Value

returns a matrix of value

pop()

pop one history position

push(s, e)

push new history position in array.

A axytrek2h5 function for convert csv file to h5 file

Description

A axytrek2h5 function for convert csv file to h5 file

Usage

axytrek2h5(filecsv = "", accres = 25, fileh5 = "")

Arguments

filecsv

A input axytrek csv file.

accres

input number of data rate in 1 seconde

fileh5

A output h5 data file.

A cats2h5 function for convert csv file to h5 file

Description

A cats2h5 function for convert csv file to h5 file

Usage

cats2h5(filecsv = "", accres = 50, fileh5 = "")

Arguments

filecsv

A input cats csv file.

accres

input resolution

fileh5

A output h5 data file.

A demow_gui function for lunch a R-shiny application to plot datalogger view

Description

A demow_gui function for lunch a R-shiny application to plot datalogger view

Usage

demo_gui()

A demoaxytrek2h5 function build demo cats h5 file

Description

A demoaxytrek2h5 function build demo cats h5 file

Usage

demoaxytrek2h5(fileh5 = "", nbrow = 10000)

Arguments

fileh5

input data H5 file

nbrow

number of row

A democats2h5 function build demo cats h5 file

Description

A democats2h5 function build demo cats h5 file

Usage

democats2h5(fileh5 = "", nbrow = 10000)

Arguments

fileh5

imput data h5 file

nbrow

number of row

A democatsmkbe function for generate ramdom data

Description

A democatsmkbe function for generate ramdom data

Usage

democatsmkbe(fbe = "", nbrow = 10, nbseq = 2)

Arguments

fbe

A outout be csv file.

nbrow

input number of data rate in 1 seconde

nbseq

input sequence lenght

A demolul2h5 function build demo lul h5 file

Description

A demolul2h5 function build demo lul h5 file

Usage

demolul2h5(fileh5 = "", nbrow = 10000)

Arguments

fileh5

A h5 data file.

nbrow

number of row

A demowacu2h5 function build demo cats h5 file

Description

A demowacu2h5 function build demo cats h5 file

Usage

demowacu2h5(fileh5 = "", nbrow = 10000)

Arguments

fileh5

A h5 data file.

nbrow

number of row

A lul2h5 function for concert lul csv file to h5 file

Description

A lul2h5 function for concert lul csv file to h5 file

Usage

lul2h5(filecsv = "", fileh5 = "", sep = "\t")

Arguments

filecsv

A input LUL csv file.

fileh5

A output h5 data file.

sep

input the field separator character.

A wacu2h5 function for concert wacu csv file to h5 file

Description

A wacu2h5 function for concert wacu csv file to h5 file

Usage

wacu2h5(filecsv = "", fileh5 = "", rtctick = 1, accres = 50,
  datestartstring = "")

Arguments

filecsv

A input WACU csv file.

fileh5

A output h5 data file.

rtctick

tpl frequence

accres

acc frequence

datestartstring

A Date string in GMT