gwid: Genome-Wide Identity-by-Descent
Methods and tools for the analysis of Genome Wide
Identity-by-Descent ('gwid') mapping data, focusing on testing whether there
is a higher occurrence of Identity-By-Descent (IBD) segments around potential causal variants
in cases compared to controls, which is crucial for identifying rare
variants. To enhance its analytical power, 'gwid' incorporates a Sliding
Window Approach, allowing for the detection and analysis of signals from
multiple Single Nucleotide Polymorphisms (SNPs).
| Version: |
0.3.0 |
| Imports: |
data.table, gdsfmt, SNPRelate, Matrix, ggplot2, plotly, utils, stats, RcppRoll, methods, piggyback, shiny, lattice, grid |
| Suggests: |
knitr, magrittr, rmarkdown, testthat (≥ 3.0.0) |
| Published: |
2024-09-03 |
| DOI: |
10.32614/CRAN.package.gwid |
| Author: |
Soroush Mahmoudiandehkordi [aut, cre],
Steven J Schrodi [aut],
Mehdi Maadooliat [aut] |
| Maintainer: |
Soroush Mahmoudiandehkordi <soroushmdg at gmail.com> |
| BugReports: |
https://github.com/soroushmdg/gwid/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/soroushmdg/gwid,
https://soroushmdg.github.io/gwid/ |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
gwid results |
Documentation:
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