Type: Package
Title: Defining Local Haplotype Variants for Use in Trait Association and Trait Prediction Analyses
Version: 0.1.1
Description: A local haplotyping tool for use in trait association and trait prediction analyses pipelines. 'HaploVar' enables users take single nucleotide polymorphisms (SNPs) (in VCF format) and a linkage disequilibrium (LD) matrix, calculate local haplotypes and format the output to be compatible with a wide range of trait association and trait prediction tools. The local haplotypes are calculated from the LD matrix using a clustering algorithm called density-based spatial clustering of applications with noise ('DBSCAN') (Ester et al., 1996) <ISBN: 1577350049>.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.2
Imports: dplyr, tidyr, tibble, magrittr, dbscan
Depends: R (≥ 4.00)
LazyData: true
LazyDataCompression: xz
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-07-16 07:11:47 UTC; 22724711
Author: Tessa MacNish ORCID iD [aut, cre], Hawlader Al-Mamun [ctb], Thomas Bergmann [ctb], Mitchell Bestry [ctb], Jacob Marsh [ctb], David Edwards [ctb]
Maintainer: Tessa MacNish <tessa.macnish@research.uwa.edu.au>
Repository: CRAN
Date/Publication: 2025-07-21 08:31:11 UTC

Linkage Disequilibrium Matrix

Description

Pairwise R^2 values for 490 Brassica napus single nucleotide polymorphisms (SNPs).

Usage

LD

Format

An object of class data.frame with 490 rows and 490 columns.

Source

Wu, D., Liang, Z., Yan, T., Xu, Y., Xuan, L., Tang, J., Zhou, G., Lohwasser, U., Hua, S., Wang, H., Chen, X., Wang, Q., Zhu, L., Maodzeka, A., Hussain, N., Li, Z., Li, X., Shamsi, I. H., Jilani, G., … Jiang, L. (2019). Whole-Genome Resequencing of a Worldwide Collection of Rapeseed Accessions Reveals the Genetic Basis of Ecotype Divergence. Molecular Plant, 12(1), 30–43. https://doi.org/10.1016/j.molp.2018.11.007


Collate define_haplotypes Lists

Description

This function collates a list of output files from define_haplotypes.

Usage

collate_define_haplotypes(haplotype_list)

Arguments

haplotype_list

A list of the lists created by the define_haplotypes function.

Value

A collated list of all haplotype tables.


Collate haplotype_variants Tables

Description

This function collates a list of output files from haplotype_variants.

Usage

collate_haplotype_variants(haplotype_variants_list, format = 1)

Arguments

haplotype_variants_list

A list of the tables created by the define_haplotypes function.

format

The format you want the output table to be in. This should be the same number you used when running define_haplotypes.

Value

A collated table of haplotype variants.


Define Haplotypes

Description

This function requires a VCF and an LD matrix. It will then define local haplotypes and return a list of tables. Each table within the list represents one haplotype. These haplotype tables display the SNP genotypes within the haplotype.

Usage

define_haplotypes(
  vcf,
  LD,
  epsilon = 0.6,
  MGmin = 30,
  hetmiss_as = "allele",
  keep_outliers = FALSE
)

Arguments

vcf

A VCF file.

LD

A LD matrix file.

epsilon

Affects haplotype size. It is a parameter of the DBSCAN clustering tool. The default is 0.6.

MGmin

The minimum number of SNPs within a cluster for it to be defined as a haplotype.The default is 30.

hetmiss_as

Affects how missing data is handled for all instances where one allele in a genotype is missing.If hetmiss_as = "allele" the genotype is assumed to be heterozygous. If hetmiss_as = "miss" the genotype is treated as NA.

keep_outliers

If FALSE, removes SNPs that are determined to be outliers.

Value

A list of haplotype tables.


Define Haplotypes Globally

Description

This function requires a list of VCF files and an LD matrices. The list of VCF files and LD matrices must be the same length. It will then define local haplotypes for each pair of files (VCF and LD matrix) and return a list of tables. Each table within the list represents one haplotype. These haplotype tables display the SNP genotypes within the haplotype.

Usage

define_haplotypes_globally(
  vcf_list,
  LD_list,
  epsilon = NULL,
  MGmin = 30,
  hetmiss_as = "allele",
  keep_outliers = FALSE
)

Arguments

vcf_list

A list of VCF files.

LD_list

A list LD matrix files.

epsilon

A list of epsilon values the same length as the list of VCF files. The epsilon affects haplotype size. It is a parameter of the DBSCAN clustering tool. The default is 0.6.

MGmin

The minimum number of SNPs within a cluster for it to be defined as a haplotype.The default is 30.

hetmiss_as

Affects how missing data is handled for all instances where one allele in a genotype is missing.If hetmiss_as = "allele" the genotype is assumed to be heterozygous. If hetmiss_as = "miss" the genotype is treated as NA.

keep_outliers

If FALSE, removes SNPs that are determined to be outliers.

Value

A collated list of haplotype tables for all VCF files provided.


Identify Haplotype Variants

Description

This function requires a VCF and an LD matrix. It will then define local haplotypes and identify the variants for each haplotype. The output can be formatted in six ways, to be compatible with a wide range of GWAS and genomic selection tools.

Usage

haplotype_variants(
  vcf,
  LD,
  epsilon = 0.6,
  MGmin = 30,
  minFreq = 2,
  hetmiss_as = "allele",
  keep_outliers = FALSE,
  format = 1
)

Arguments

vcf

A VCF file.

LD

A LD matrix file.

epsilon

Affects haplotype size. It is a parameter of the DBSCAN clustering tool. The default is 0.6.

MGmin

The minimum number of SNPs within a cluster for it to be defined as a haplotype.The default is 30.

minFreq

The minimum number of individuals a haplotype variant must be present in to be considered a valid haplotype variant. The default is 2.

hetmiss_as

Affects how missing data is handled for all instances where one allele in a genotype is missing.If hetmiss_as = "allele" the genotype is assumed to be heterozygous. If hetmiss_as = "miss" the genotype is treated as NA.

keep_outliers

If FALSE removes SNPs, that are determined to be outliers.

format

The output format. There are six different output formats (1,2,3,4,5,6).

Value

A table of haplotype genotypes in your chosen format.


Identify Haplotype Variants Globally

Description

This function requires a list of VCF files and an LD matrices. It will then define local haplotypes and identify the variants for each haplotype. The output can be formatted in six ways, to be compatible with a wide range of GWAS and genomic selection tools.

Usage

haplotype_variants_global(
  vcf_list,
  LD_list,
  epsilon = NULL,
  MGmin = 30,
  minFreq = 2,
  hetmiss_as = "allele",
  keep_outliers = FALSE,
  format = 1
)

Arguments

vcf_list

A list of VCF files.

LD_list

A list of LD matrix files.

epsilon

A list of epsilon values the same length as the list of VCF files. The epsilon affects haplotype size. It is a parameter of the DBSCAN clustering tool. The default is 0.6.

MGmin

The minimum number of SNPs within a cluster for it to be defined as a haplotype.The default is 30.

minFreq

The minimum number of individuals a haplotype variant must be present in to be considered a valid haplotype variant. The default is 2.

hetmiss_as

Affects how missing data is handled for all instances where one allele in a genotype is missing.If hetmiss_as = "allele" the genotype is assumed to be heterozygous. If hetmiss_as = "miss" the genotype is treated as NA.

keep_outliers

If FALSE removes SNPs, that are determined to be outliers.

format

The output format. There are six different output formats (1,2,3,4,5,6).

Value

A table of haplotype genotypes in your chosen format.


Brassica napus genotype data in VCF format

Description

A subset of Brassica napus genotype data for chromosome C01. The genotype data reports single nucleotide polymorphism (SNP) data. The variables are as follows:

Usage

vcf

Format

A data frame with 490 rows and 1000 variables:

#CHROM

The chromsome where the SNP is located

POS

The reference position of the SNP (bp)

ID

The name/ID of the SNP

REF

Reference base

ALT

Alternate base

QUAL

Phred-scaled quality score of the alternate base

FILTER

PASS if the SNP has passed all filters

INFO

Additional information

FORMAT

The data type of the genotype

R4155_R4155

Genotypes for sample R4155_R4155

R4156_R4156

Genotypes for sample R4156_R4156

R4157_R4157

Genotypes for sample R4157_R4157

R4158_R4158

Genotypes for sample R4158_R4158

R4159_R4159

Genotypes for sample R4159_R4159

R4160_R4160

Genotypes for sample R4160_R4160

R4161_R4161

Genotypes for sample R4161_R4161

R4162_R4162

Genotypes for sample R4162_R4162

R4163_R4163

Genotypes for sample R4163_R4163

R4164_R4164

Genotypes for sample R4164_R4164

R4165_R4165

Genotypes for sample R4165_R4165

R4166_R4166

Genotypes for sample R4166_R4166

R4167_R4167

Genotypes for sample R4167_R4167

R4168_R4168

Genotypes for sample R4168_R4168

R4169_R4169

Genotypes for sample R4169_R4169

R4170_R4170

Genotypes for sample R4170_R4170

R4171_R4171

Genotypes for sample R4171_R4171

R4172_R4172

Genotypes for sample R4172_R4172

R4173_R4173

Genotypes for sample R4173_R4173

R4174_R4174

Genotypes for sample R4174_R4174

R4176_R4176

Genotypes for sample R4176_R4176

R4177_R4177

Genotypes for sample R4177_R4177

R4178_R4178

Genotypes for sample R4178_R4178

R4179_R4179

Genotypes for sample R4179_R4179

R4180_R4180

Genotypes for sample R4180_R4180

R4181_R4181

Genotypes for sample R4181_R4181

R4182_R4182

Genotypes for sample R4182_R4182

R4183_R4183

Genotypes for sample R4183_R4183

R4184_R4184

Genotypes for sample R4184_R4184

R4185_R4185

Genotypes for sample R4185_R4185

R4186_R4186

Genotypes for sample R4186_R4186

R4187_R4187

Genotypes for sample R4187_R4187

R4188_R4188

Genotypes for sample R4188_R4188

R4189_R4189

Genotypes for sample R4189_R4189

R4190_R4190

Genotypes for sample R4190_R4190

R4191_R4191

Genotypes for sample R4191_R4191

R4192_R4192

Genotypes for sample R4192_R4192

R4193_R4193

Genotypes for sample R4193_R4193

R4194_R4194

Genotypes for sample R4194_R4194

R4195_R4195

Genotypes for sample R4195_R4195

R4196_R4196

Genotypes for sample R4196_R4196

R4197_R4197

Genotypes for sample R4197_R4197

R4198_R4198

Genotypes for sample R4198_R4198

R4199_R4199

Genotypes for sample R4199_R4199

R4200_R4200

Genotypes for sample R4200_R4200

R4201_R4201

Genotypes for sample R4201_R4201

R4202_R4202

Genotypes for sample R4202_R4202

R4203_R4203

Genotypes for sample R4203_R4203

R4204_R4204

Genotypes for sample R4204_R4204

R4205_R4205

Genotypes for sample R4205_R4205

R4206_R4206

Genotypes for sample R4206_R4206

R4207_R4207

Genotypes for sample R4207_R4207

R4208_R4208

Genotypes for sample R4208_R4208

R4209_R4209

Genotypes for sample R4209_R4209

R4210_R4210

Genotypes for sample R4210_R4210

R4211_R4211

Genotypes for sample R4211_R4211

R4212_R4212

Genotypes for sample R4212_R4212

R4213_R4213

Genotypes for sample R4213_R4213

R4214_R4214

Genotypes for sample R4214_R4214

R4215_R4215

Genotypes for sample R4215_R4215

R4216_R4216

Genotypes for sample R4216_R4216

R4217_R4217

Genotypes for sample R4217_R4217

R4218_R4218

Genotypes for sample R4218_R4218

R4219_R4219

Genotypes for sample R4219_R4219

R4220_R4220

Genotypes for sample R4220_R4220

R4221_R4221

Genotypes for sample R4221_R4221

R4222_R4222

Genotypes for sample R4222_R4222

R4223_R4223

Genotypes for sample R4223_R4223

R4224_R4224

Genotypes for sample R4224_R4224

R4225_R4225

Genotypes for sample R4225_R4225

R4226_R4226

Genotypes for sample R4226_R4226

R4227_R4227

Genotypes for sample R4227_R4227

R4228_R4228

Genotypes for sample R4228_R4228

R4229_R4229

Genotypes for sample R4229_R4229

R4230_R4230

Genotypes for sample R4230_R4230

R4231_R4231

Genotypes for sample R4231_R4231

R4232_R4232

Genotypes for sample R4232_R4232

R4233_R4233

Genotypes for sample R4233_R4233

R4234_R4234

Genotypes for sample R4234_R4234

R4235_R4235

Genotypes for sample R4235_R4235

R4236_R4236

Genotypes for sample R4236_R4236

R4237_R4237

Genotypes for sample R4237_R4237

R4238_R4238

Genotypes for sample R4238_R4238

R4239_R4239

Genotypes for sample R4239_R4239

R4240_R4240

Genotypes for sample R4240_R4240

R4241_R4241

Genotypes for sample R4241_R4241

R4242_R4242

Genotypes for sample R4242_R4242

R4243_R4243

Genotypes for sample R4243_R4243

R4244_R4244

Genotypes for sample R4244_R4244

R4245_R4245

Genotypes for sample R4245_R4245

R4246_R4246

Genotypes for sample R4246_R4246

R4247_R4247

Genotypes for sample R4247_R4247

R4248_R4248

Genotypes for sample R4248_R4248

R4249_R4249

Genotypes for sample R4249_R4249

R4250_R4250

Genotypes for sample R4250_R4250

R4251_R4251

Genotypes for sample R4251_R4251

R4252_R4252

Genotypes for sample R4252_R4252

R4253_R4253

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R4254_R4254

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R4255_R4255

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R4256_R4256

Genotypes for sample R4256_R4256

R4257_R4257

Genotypes for sample R4257_R4257

R4258_R4258

Genotypes for sample R4258_R4258

R4259_R4259

Genotypes for sample R4259_R4259

R4260_R4260

Genotypes for sample R4260_R4260

R4261_R4261

Genotypes for sample R4261_R4261

R4262_R4262

Genotypes for sample R4262_R4262

R4263_R4263

Genotypes for sample R4263_R4263

R4264_R4264

Genotypes for sample R4264_R4264

R4265_R4265

Genotypes for sample R4265_R4265

R4266_R4266

Genotypes for sample R4266_R4266

R4267_R4267

Genotypes for sample R4267_R4267

R4268_R4268

Genotypes for sample R4268_R4268

R4269_R4269

Genotypes for sample R4269_R4269

R4270_R4270

Genotypes for sample R4270_R4270

R4271_R4271

Genotypes for sample R4271_R4271

R4272_R4272

Genotypes for sample R4272_R4272

R4273_R4273

Genotypes for sample R4273_R4273

R4274_R4274

Genotypes for sample R4274_R4274

R4275_R4275

Genotypes for sample R4275_R4275

R4276_R4276

Genotypes for sample R4276_R4276

R4277_R4277

Genotypes for sample R4277_R4277

R4278_R4278

Genotypes for sample R4278_R4278

R4279_R4279

Genotypes for sample R4279_R4279

R4280_R4280

Genotypes for sample R4280_R4280

R4281_R4281

Genotypes for sample R4281_R4281

R4282_R4282

Genotypes for sample R4282_R4282

R4283_R4283

Genotypes for sample R4283_R4283

R4284_R4284

Genotypes for sample R4284_R4284

R4285_R4285

Genotypes for sample R4285_R4285

R4286_R4286

Genotypes for sample R4286_R4286

R4287_R4287

Genotypes for sample R4287_R4287

R4288_R4288

Genotypes for sample R4288_R4288

R4289_R4289

Genotypes for sample R4289_R4289

R4290_R4290

Genotypes for sample R4290_R4290

R4291_R4291

Genotypes for sample R4291_R4291

R4292_R4292

Genotypes for sample R4292_R4292

R4293_R4293

Genotypes for sample R4293_R4293

R4294_R4294

Genotypes for sample R4294_R4294

R4295_R4295

Genotypes for sample R4295_R4295

R4296_R4296

Genotypes for sample R4296_R4296

R4297_R4297

Genotypes for sample R4297_R4297

R4298_R4298

Genotypes for sample R4298_R4298

R4299_R4299

Genotypes for sample R4299_R4299

R4300_R4300

Genotypes for sample R4300_R4300

R4301_R4301

Genotypes for sample R4301_R4301

R4302_R4302

Genotypes for sample R4302_R4302

R4303_R4303

Genotypes for sample R4303_R4303

R4304_R4304

Genotypes for sample R4304_R4304

R4305_R4305

Genotypes for sample R4305_R4305

R4306_R4306

Genotypes for sample R4306_R4306

R4307_R4307

Genotypes for sample R4307_R4307

R4308_R4308

Genotypes for sample R4308_R4308

R4309_R4309

Genotypes for sample R4309_R4309

R4310_R4310

Genotypes for sample R4310_R4310

R4311_R4311

Genotypes for sample R4311_R4311

R4313_R4313

Genotypes for sample R4313_R4313

R4314_R4314

Genotypes for sample R4314_R4314

R4315_R4315

Genotypes for sample R4315_R4315

R4316_R4316

Genotypes for sample R4316_R4316

R4317_R4317

Genotypes for sample R4317_R4317

R4318_R4318

Genotypes for sample R4318_R4318

R4319_R4319

Genotypes for sample R4319_R4319

R4320_R4320

Genotypes for sample R4320_R4320

R4321_R4321

Genotypes for sample R4321_R4321

R4322_R4322

Genotypes for sample R4322_R4322

R4323_R4323

Genotypes for sample R4323_R4323

R4324_R4324

Genotypes for sample R4324_R4324

R4325_R4325

Genotypes for sample R4325_R4325

R4326_R4326

Genotypes for sample R4326_R4326

R4327_R4327

Genotypes for sample R4327_R4327

R4328_R4328

Genotypes for sample R4328_R4328

R4329_R4329

Genotypes for sample R4329_R4329

R4330_R4330

Genotypes for sample R4330_R4330

R4331_R4331

Genotypes for sample R4331_R4331

R4332_R4332

Genotypes for sample R4332_R4332

R4333_R4333

Genotypes for sample R4333_R4333

R4334_R4334

Genotypes for sample R4334_R4334

R4335_R4335

Genotypes for sample R4335_R4335

R4336_R4336

Genotypes for sample R4336_R4336

R4337_R4337

Genotypes for sample R4337_R4337

R4338_R4338

Genotypes for sample R4338_R4338

R4339_R4339

Genotypes for sample R4339_R4339

R4340_R4340

Genotypes for sample R4340_R4340

R4341_R4341

Genotypes for sample R4341_R4341

R4342_R4342

Genotypes for sample R4342_R4342

R4343_R4343

Genotypes for sample R4343_R4343

R4344_R4344

Genotypes for sample R4344_R4344

R4345_R4345

Genotypes for sample R4345_R4345

R4346_R4346

Genotypes for sample R4346_R4346

R4347_R4347

Genotypes for sample R4347_R4347

R4348_R4348

Genotypes for sample R4348_R4348

R4349_R4349

Genotypes for sample R4349_R4349

R4350_R4350

Genotypes for sample R4350_R4350

R4351_R4351

Genotypes for sample R4351_R4351

R4352_R4352

Genotypes for sample R4352_R4352

R4353_R4353

Genotypes for sample R4353_R4353

R4354_R4354

Genotypes for sample R4354_R4354

R4355_R4355

Genotypes for sample R4355_R4355

R4356_R4356

Genotypes for sample R4356_R4356

R4357_R4357

Genotypes for sample R4357_R4357

R4358_R4358

Genotypes for sample R4358_R4358

R4359_R4359

Genotypes for sample R4359_R4359

R4360_R4360

Genotypes for sample R4360_R4360

R4361_R4361

Genotypes for sample R4361_R4361

R4363_R4363

Genotypes for sample R4363_R4363

R4364_R4364

Genotypes for sample R4364_R4364

R4365_R4365

Genotypes for sample R4365_R4365

R4366_R4366

Genotypes for sample R4366_R4366

R4367_R4367

Genotypes for sample R4367_R4367

R4368_R4368

Genotypes for sample R4368_R4368

R4369_R4369

Genotypes for sample R4369_R4369

R4370_R4370

Genotypes for sample R4370_R4370

R4371_R4371

Genotypes for sample R4371_R4371

R4372_R4372

Genotypes for sample R4372_R4372

R4373_R4373

Genotypes for sample R4373_R4373

R4374_R4374

Genotypes for sample R4374_R4374

R4375_R4375

Genotypes for sample R4375_R4375

R4376_R4376

Genotypes for sample R4376_R4376

R4377_R4377

Genotypes for sample R4377_R4377

R4378_R4378

Genotypes for sample R4378_R4378

R4379_R4379

Genotypes for sample R4379_R4379

R4380_R4380

Genotypes for sample R4380_R4380

R4381_R4381

Genotypes for sample R4381_R4381

R4382_R4382

Genotypes for sample R4382_R4382

R4383_R4383

Genotypes for sample R4383_R4383

R4384_R4384

Genotypes for sample R4384_R4384

R4385_R4385

Genotypes for sample R4385_R4385

R4386_R4386

Genotypes for sample R4386_R4386

R4387_R4387

Genotypes for sample R4387_R4387

R4388_R4388

Genotypes for sample R4388_R4388

R4389_R4389

Genotypes for sample R4389_R4389

R4390_R4390

Genotypes for sample R4390_R4390

R4391_R4391

Genotypes for sample R4391_R4391

R4392_R4392

Genotypes for sample R4392_R4392

R4393_R4393

Genotypes for sample R4393_R4393

R4395_R4395

Genotypes for sample R4395_R4395

R4396_R4396

Genotypes for sample R4396_R4396

R4397_R4397

Genotypes for sample R4397_R4397

R4398_R4398

Genotypes for sample R4398_R4398

R4399_R4399

Genotypes for sample R4399_R4399

R4400_R4400

Genotypes for sample R4400_R4400

R4401_R4401

Genotypes for sample R4401_R4401

R4402_R4402

Genotypes for sample R4402_R4402

R4403_R4403

Genotypes for sample R4403_R4403

R4404_R4404

Genotypes for sample R4404_R4404

R4405_R4405

Genotypes for sample R4405_R4405

R4406_R4406

Genotypes for sample R4406_R4406

R4407_R4407

Genotypes for sample R4407_R4407

R4408_R4408

Genotypes for sample R4408_R4408

R4409_R4409

Genotypes for sample R4409_R4409

R4410_R4410

Genotypes for sample R4410_R4410

R4411_R4411

Genotypes for sample R4411_R4411

R4412_R4412

Genotypes for sample R4412_R4412

R4413_R4413

Genotypes for sample R4413_R4413

R4414_R4414

Genotypes for sample R4414_R4414

R4415_R4415

Genotypes for sample R4415_R4415

R4416_R4416

Genotypes for sample R4416_R4416

R4417_R4417

Genotypes for sample R4417_R4417

R4418_R4418

Genotypes for sample R4418_R4418

R4419_R4419

Genotypes for sample R4419_R4419

R4420_R4420

Genotypes for sample R4420_R4420

R4421_R4421

Genotypes for sample R4421_R4421

R4422_R4422

Genotypes for sample R4422_R4422

R4423_R4423

Genotypes for sample R4423_R4423

R4424_R4424

Genotypes for sample R4424_R4424

R4425_R4425

Genotypes for sample R4425_R4425

R4426_R4426

Genotypes for sample R4426_R4426

R4427_R4427

Genotypes for sample R4427_R4427

R4428_R4428

Genotypes for sample R4428_R4428

R4429_R4429

Genotypes for sample R4429_R4429

R4430_R4430

Genotypes for sample R4430_R4430

R4431_R4431

Genotypes for sample R4431_R4431

R4432_R4432

Genotypes for sample R4432_R4432

R4433_R4433

Genotypes for sample R4433_R4433

R4434_R4434

Genotypes for sample R4434_R4434

R4435_R4435

Genotypes for sample R4435_R4435

R4436_R4436

Genotypes for sample R4436_R4436

R4437_R4437

Genotypes for sample R4437_R4437

R4438_R4438

Genotypes for sample R4438_R4438

R4439_R4439

Genotypes for sample R4439_R4439

R4440_R4440

Genotypes for sample R4440_R4440

R4441_R4441

Genotypes for sample R4441_R4441

R4442_R4442

Genotypes for sample R4442_R4442

R4443_R4443

Genotypes for sample R4443_R4443

R4444_R4444

Genotypes for sample R4444_R4444

R4445_R4445

Genotypes for sample R4445_R4445

R4446_R4446

Genotypes for sample R4446_R4446

R4447_R4447

Genotypes for sample R4447_R4447

R4448_R4448

Genotypes for sample R4448_R4448

R4449_R4449

Genotypes for sample R4449_R4449

R4450_R4450

Genotypes for sample R4450_R4450

R4451_R4451

Genotypes for sample R4451_R4451

R4452_R4452

Genotypes for sample R4452_R4452

R4453_R4453

Genotypes for sample R4453_R4453

R4454_R4454

Genotypes for sample R4454_R4454

R4455_R4455

Genotypes for sample R4455_R4455

R4456_R4456

Genotypes for sample R4456_R4456

R4457_R4457

Genotypes for sample R4457_R4457

R4458_R4458

Genotypes for sample R4458_R4458

R4459_R4459

Genotypes for sample R4459_R4459

R4460_R4460

Genotypes for sample R4460_R4460

R4461_R4461

Genotypes for sample R4461_R4461

R4462_R4462

Genotypes for sample R4462_R4462

R4463_R4463

Genotypes for sample R4463_R4463

R4464_R4464

Genotypes for sample R4464_R4464

R4465_R4465

Genotypes for sample R4465_R4465

R4466_R4466

Genotypes for sample R4466_R4466

R4467_R4467

Genotypes for sample R4467_R4467

R4468_R4468

Genotypes for sample R4468_R4468

R4469_R4469

Genotypes for sample R4469_R4469

R4470_R4470

Genotypes for sample R4470_R4470

R4471_R4471

Genotypes for sample R4471_R4471

R4472_R4472

Genotypes for sample R4472_R4472

R4473_R4473

Genotypes for sample R4473_R4473

R4474_R4474

Genotypes for sample R4474_R4474

R4476_R4476

Genotypes for sample R4476_R4476

R4477_R4477

Genotypes for sample R4477_R4477

R4478_R4478

Genotypes for sample R4478_R4478

R4479_R4479

Genotypes for sample R4479_R4479

R4480_R4480

Genotypes for sample R4480_R4480

R4481_R4481

Genotypes for sample R4481_R4481

R4482_R4482

Genotypes for sample R4482_R4482

R4483_R4483

Genotypes for sample R4483_R4483

R4484_R4484

Genotypes for sample R4484_R4484

R4485_R4485

Genotypes for sample R4485_R4485

R4486_R4486

Genotypes for sample R4486_R4486

R4487_R4487

Genotypes for sample R4487_R4487

R4488_R4488

Genotypes for sample R4488_R4488

R4489_R4489

Genotypes for sample R4489_R4489

R4491_R4491

Genotypes for sample R4491_R4491

R4492_R4492

Genotypes for sample R4492_R4492

R4493_R4493

Genotypes for sample R4493_R4493

R4494_R4494

Genotypes for sample R4494_R4494

R4495_R4495

Genotypes for sample R4495_R4495

R4496_R4496

Genotypes for sample R4496_R4496

R4497_R4497

Genotypes for sample R4497_R4497

R4498_R4498

Genotypes for sample R4498_R4498

R4500_R4500

Genotypes for sample R4500_R4500

R4501_R4501

Genotypes for sample R4501_R4501

R4502_R4502

Genotypes for sample R4502_R4502

R4503_R4503

Genotypes for sample R4503_R4503

R4504_R4504

Genotypes for sample R4504_R4504

R4506_R4506

Genotypes for sample R4506_R4506

R4507_R4507

Genotypes for sample R4507_R4507

R4508_R4508

Genotypes for sample R4508_R4508

R4509_R4509

Genotypes for sample R4509_R4509

R4510_R4510

Genotypes for sample R4510_R4510

R4511_R4511

Genotypes for sample R4511_R4511

R4512_R4512

Genotypes for sample R4512_R4512

R4513_R4513

Genotypes for sample R4513_R4513

R4514_R4514

Genotypes for sample R4514_R4514

R4515_R4515

Genotypes for sample R4515_R4515

R4516_R4516

Genotypes for sample R4516_R4516

R4517_R4517

Genotypes for sample R4517_R4517

R4518_R4518

Genotypes for sample R4518_R4518

R4519_R4519

Genotypes for sample R4519_R4519

R4520_R4520

Genotypes for sample R4520_R4520

R4521_R4521

Genotypes for sample R4521_R4521

R4522_R4522

Genotypes for sample R4522_R4522

R4523_R4523

Genotypes for sample R4523_R4523

R4524_R4524

Genotypes for sample R4524_R4524

R4525_R4525

Genotypes for sample R4525_R4525

R4526_R4526

Genotypes for sample R4526_R4526

R4527_R4527

Genotypes for sample R4527_R4527

R4528_R4528

Genotypes for sample R4528_R4528

R4529_R4529

Genotypes for sample R4529_R4529

R4531_R4531

Genotypes for sample R4531_R4531

R4532_R4532

Genotypes for sample R4532_R4532

R4533_R4533

Genotypes for sample R4533_R4533

R4534_R4534

Genotypes for sample R4534_R4534

R4535_R4535

Genotypes for sample R4535_R4535

R4536_R4536

Genotypes for sample R4536_R4536

R4537_R4537

Genotypes for sample R4537_R4537

R4538_R4538

Genotypes for sample R4538_R4538

R4539_R4539

Genotypes for sample R4539_R4539

R4540_R4540

Genotypes for sample R4540_R4540

R4541_R4541

Genotypes for sample R4541_R4541

R4542_R4542

Genotypes for sample R4542_R4542

R4543_R4543

Genotypes for sample R4543_R4543

R4544_R4544

Genotypes for sample R4544_R4544

R4545_R4545

Genotypes for sample R4545_R4545

R4546_R4546

Genotypes for sample R4546_R4546

R4547_R4547

Genotypes for sample R4547_R4547

R4548_R4548

Genotypes for sample R4548_R4548

R4549_R4549

Genotypes for sample R4549_R4549

R4550_R4550

Genotypes for sample R4550_R4550

R4551_R4551

Genotypes for sample R4551_R4551

R4552_R4552

Genotypes for sample R4552_R4552

R4553_R4553

Genotypes for sample R4553_R4553

R4554_R4554

Genotypes for sample R4554_R4554

R4555_R4555

Genotypes for sample R4555_R4555

R4556_R4556

Genotypes for sample R4556_R4556

R4557_R4557

Genotypes for sample R4557_R4557

R4558_R4558

Genotypes for sample R4558_R4558

R4559_R4559

Genotypes for sample R4559_R4559

R4560_R4560

Genotypes for sample R4560_R4560

R4561_R4561

Genotypes for sample R4561_R4561

R4562_R4562

Genotypes for sample R4562_R4562

R4563_R4563

Genotypes for sample R4563_R4563

R4564_R4564

Genotypes for sample R4564_R4564

R4565_R4565

Genotypes for sample R4565_R4565

R4566_R4566

Genotypes for sample R4566_R4566

R4567_R4567

Genotypes for sample R4567_R4567

R4568_R4568

Genotypes for sample R4568_R4568

R4569_R4569

Genotypes for sample R4569_R4569

R4570_R4570

Genotypes for sample R4570_R4570

R4571_R4571

Genotypes for sample R4571_R4571

R4572_R4572

Genotypes for sample R4572_R4572

R4573_R4573

Genotypes for sample R4573_R4573

R4574_R4574

Genotypes for sample R4574_R4574

R4575_R4575

Genotypes for sample R4575_R4575

R4576_R4576

Genotypes for sample R4576_R4576

R4577_R4577

Genotypes for sample R4577_R4577

R4578_R4578

Genotypes for sample R4578_R4578

R4579_R4579

Genotypes for sample R4579_R4579

R4580_R4580

Genotypes for sample R4580_R4580

R4581_R4581

Genotypes for sample R4581_R4581

R4582_R4582

Genotypes for sample R4582_R4582

R4583_R4583

Genotypes for sample R4583_R4583

R4584_R4584

Genotypes for sample R4584_R4584

R4585_R4585

Genotypes for sample R4585_R4585

R4586_R4586

Genotypes for sample R4586_R4586

R4587_R4587

Genotypes for sample R4587_R4587

R4588_R4588

Genotypes for sample R4588_R4588

R4589_R4589

Genotypes for sample R4589_R4589

R4590_R4590

Genotypes for sample R4590_R4590

R4591_R4591

Genotypes for sample R4591_R4591

R4592_R4592

Genotypes for sample R4592_R4592

R4593_R4593

Genotypes for sample R4593_R4593

R4594_R4594

Genotypes for sample R4594_R4594

R4595_R4595

Genotypes for sample R4595_R4595

R4596_R4596

Genotypes for sample R4596_R4596

R4597_R4597

Genotypes for sample R4597_R4597

R4598_R4598

Genotypes for sample R4598_R4598

R4599_R4599

Genotypes for sample R4599_R4599

R4600_R4600

Genotypes for sample R4600_R4600

R4601_R4601

Genotypes for sample R4601_R4601

R4602_R4602

Genotypes for sample R4602_R4602

R4603_R4603

Genotypes for sample R4603_R4603

R4604_R4604

Genotypes for sample R4604_R4604

R4605_R4605

Genotypes for sample R4605_R4605

R4606_R4606

Genotypes for sample R4606_R4606

R4607_R4607

Genotypes for sample R4607_R4607

R4608_R4608

Genotypes for sample R4608_R4608

R4609_R4609

Genotypes for sample R4609_R4609

R4610_R4610

Genotypes for sample R4610_R4610

R4611_R4611

Genotypes for sample R4611_R4611

R4612_R4612

Genotypes for sample R4612_R4612

R4613_R4613

Genotypes for sample R4613_R4613

R4614_R4614

Genotypes for sample R4614_R4614

R4615_R4615

Genotypes for sample R4615_R4615

R4616_R4616

Genotypes for sample R4616_R4616

R4617_R4617

Genotypes for sample R4617_R4617

R4618_R4618

Genotypes for sample R4618_R4618

R4619_R4619

Genotypes for sample R4619_R4619

R4620_R4620

Genotypes for sample R4620_R4620

R4621_R4621

Genotypes for sample R4621_R4621

R4622_R4622

Genotypes for sample R4622_R4622

R4623_R4623

Genotypes for sample R4623_R4623

R4624_R4624

Genotypes for sample R4624_R4624

R4625_R4625

Genotypes for sample R4625_R4625

R4626_R4626

Genotypes for sample R4626_R4626

R4627_R4627

Genotypes for sample R4627_R4627

R4628_R4628

Genotypes for sample R4628_R4628

R4629_R4629

Genotypes for sample R4629_R4629

R4630_R4630

Genotypes for sample R4630_R4630

R4631_R4631

Genotypes for sample R4631_R4631

R4632_R4632

Genotypes for sample R4632_R4632

R4633_R4633

Genotypes for sample R4633_R4633

R4634_R4634

Genotypes for sample R4634_R4634

R4635_R4635

Genotypes for sample R4635_R4635

R4636_R4636

Genotypes for sample R4636_R4636

R4637_R4637

Genotypes for sample R4637_R4637

R4638_R4638

Genotypes for sample R4638_R4638

R4639_R4639

Genotypes for sample R4639_R4639

R4640_R4640

Genotypes for sample R4640_R4640

R4641_R4641

Genotypes for sample R4641_R4641

R4642_R4642

Genotypes for sample R4642_R4642

R4643_R4643

Genotypes for sample R4643_R4643

R4644_R4644

Genotypes for sample R4644_R4644

R4645_R4645

Genotypes for sample R4645_R4645

R4646_R4646

Genotypes for sample R4646_R4646

R4647_R4647

Genotypes for sample R4647_R4647

R4648_R4648

Genotypes for sample R4648_R4648

R4649_R4649

Genotypes for sample R4649_R4649

R4650_R4650

Genotypes for sample R4650_R4650

R4651_R4651

Genotypes for sample R4651_R4651

R4652_R4652

Genotypes for sample R4652_R4652

R4653_R4653

Genotypes for sample R4653_R4653

R4654_R4654

Genotypes for sample R4654_R4654

R4655_R4655

Genotypes for sample R4655_R4655

R4656_R4656

Genotypes for sample R4656_R4656

R4657_R4657

Genotypes for sample R4657_R4657

R4658_R4658

Genotypes for sample R4658_R4658

R4659_R4659

Genotypes for sample R4659_R4659

R4660_R4660

Genotypes for sample R4660_R4660

R4661_R4661

Genotypes for sample R4661_R4661

R4662_R4662

Genotypes for sample R4662_R4662

R4663_R4663

Genotypes for sample R4663_R4663

R4664_R4664

Genotypes for sample R4664_R4664

R4665_R4665

Genotypes for sample R4665_R4665

R4666_R4666

Genotypes for sample R4666_R4666

R4667_R4667

Genotypes for sample R4667_R4667

R4668_R4668

Genotypes for sample R4668_R4668

R4669_R4669

Genotypes for sample R4669_R4669

R4670_R4670

Genotypes for sample R4670_R4670

R4671_R4671

Genotypes for sample R4671_R4671

R4672_R4672

Genotypes for sample R4672_R4672

R4673_R4673

Genotypes for sample R4673_R4673

R4674_R4674

Genotypes for sample R4674_R4674

R4675_R4675

Genotypes for sample R4675_R4675

R4676_R4676

Genotypes for sample R4676_R4676

R4677_R4677

Genotypes for sample R4677_R4677

R4678_R4678

Genotypes for sample R4678_R4678

R4679_R4679

Genotypes for sample R4679_R4679

R4680_R4680

Genotypes for sample R4680_R4680

R4681_R4681

Genotypes for sample R4681_R4681

R4682_R4682

Genotypes for sample R4682_R4682

R4683_R4683

Genotypes for sample R4683_R4683

R4684_R4684

Genotypes for sample R4684_R4684

R4685_R4685

Genotypes for sample R4685_R4685

R4686_R4686

Genotypes for sample R4686_R4686

R4687_R4687

Genotypes for sample R4687_R4687

R4688_R4688

Genotypes for sample R4688_R4688

R4689_R4689

Genotypes for sample R4689_R4689

R4690_R4690

Genotypes for sample R4690_R4690

R4691_R4691

Genotypes for sample R4691_R4691

R4692_R4692

Genotypes for sample R4692_R4692

R4693_R4693

Genotypes for sample R4693_R4693

R4694_R4694

Genotypes for sample R4694_R4694

R4695_R4695

Genotypes for sample R4695_R4695

R4696_R4696

Genotypes for sample R4696_R4696

R4697_R4697

Genotypes for sample R4697_R4697

R4698_R4698

Genotypes for sample R4698_R4698

R4699_R4699

Genotypes for sample R4699_R4699

R4700_R4700

Genotypes for sample R4700_R4700

R4701_R4701

Genotypes for sample R4701_R4701

R4702_R4702

Genotypes for sample R4702_R4702

R4703_R4703

Genotypes for sample R4703_R4703

R4704_R4704

Genotypes for sample R4704_R4704

R4705_R4705

Genotypes for sample R4705_R4705

R4706_R4706

Genotypes for sample R4706_R4706

R4707_R4707

Genotypes for sample R4707_R4707

R4708_R4708

Genotypes for sample R4708_R4708

R4709_R4709

Genotypes for sample R4709_R4709

R4710_R4710

Genotypes for sample R4710_R4710

R4711_R4711

Genotypes for sample R4711_R4711

R4712_R4712

Genotypes for sample R4712_R4712

R4713_R4713

Genotypes for sample R4713_R4713

R4714_R4714

Genotypes for sample R4714_R4714

R4715_R4715

Genotypes for sample R4715_R4715

R4716_R4716

Genotypes for sample R4716_R4716

R4717_R4717

Genotypes for sample R4717_R4717

R4718_R4718

Genotypes for sample R4718_R4718

R4719_R4719

Genotypes for sample R4719_R4719

R4720_R4720

Genotypes for sample R4720_R4720

R4721_R4721

Genotypes for sample R4721_R4721

R4722_R4722

Genotypes for sample R4722_R4722

R4723_R4723

Genotypes for sample R4723_R4723

R4724_R4724

Genotypes for sample R4724_R4724

R4725_R4725

Genotypes for sample R4725_R4725

R4726_R4726

Genotypes for sample R4726_R4726

R4727_R4727

Genotypes for sample R4727_R4727

R4728_R4728

Genotypes for sample R4728_R4728

R4729_R4729

Genotypes for sample R4729_R4729

R4730_R4730

Genotypes for sample R4730_R4730

R4731_R4731

Genotypes for sample R4731_R4731

R4732_R4732

Genotypes for sample R4732_R4732

R4733_R4733

Genotypes for sample R4733_R4733

R4734_R4734

Genotypes for sample R4734_R4734

R4735_R4735

Genotypes for sample R4735_R4735

R4736_R4736

Genotypes for sample R4736_R4736

R4737_R4737

Genotypes for sample R4737_R4737

R4738_R4738

Genotypes for sample R4738_R4738

R4739_R4739

Genotypes for sample R4739_R4739

R4740_R4740

Genotypes for sample R4740_R4740

R4741_R4741

Genotypes for sample R4741_R4741

R4742_R4742

Genotypes for sample R4742_R4742

R4743_R4743

Genotypes for sample R4743_R4743

R4744_R4744

Genotypes for sample R4744_R4744

R4745_R4745

Genotypes for sample R4745_R4745

R4746_R4746

Genotypes for sample R4746_R4746

R4747_R4747

Genotypes for sample R4747_R4747

R4748_R4748

Genotypes for sample R4748_R4748

R4749_R4749

Genotypes for sample R4749_R4749

R4750_R4750

Genotypes for sample R4750_R4750

R4751_R4751

Genotypes for sample R4751_R4751

R4752_R4752

Genotypes for sample R4752_R4752

R4753_R4753

Genotypes for sample R4753_R4753

R4754_R4754

Genotypes for sample R4754_R4754

R4755_R4755

Genotypes for sample R4755_R4755

R4756_R4756

Genotypes for sample R4756_R4756

R4757_R4757

Genotypes for sample R4757_R4757

R4758_R4758

Genotypes for sample R4758_R4758

R4759_R4759

Genotypes for sample R4759_R4759

R4760_R4760

Genotypes for sample R4760_R4760

R4761_R4761

Genotypes for sample R4761_R4761

R4762_R4762

Genotypes for sample R4762_R4762

R4763_R4763

Genotypes for sample R4763_R4763

R4765_R4765

Genotypes for sample R4765_R4765

R4766_R4766

Genotypes for sample R4766_R4766

R4767_R4767

Genotypes for sample R4767_R4767

R4768_R4768

Genotypes for sample R4768_R4768

R4769_R4769

Genotypes for sample R4769_R4769

R4770_R4770

Genotypes for sample R4770_R4770

R4771_R4771

Genotypes for sample R4771_R4771

R4772_R4772

Genotypes for sample R4772_R4772

R4773_R4773

Genotypes for sample R4773_R4773

R4774_R4774

Genotypes for sample R4774_R4774

R4775_R4775

Genotypes for sample R4775_R4775

R4776_R4776

Genotypes for sample R4776_R4776

R4777_R4777

Genotypes for sample R4777_R4777

R4778_R4778

Genotypes for sample R4778_R4778

R4779_R4779

Genotypes for sample R4779_R4779

R4780_R4780

Genotypes for sample R4780_R4780

R4781_R4781

Genotypes for sample R4781_R4781

R4782_R4782

Genotypes for sample R4782_R4782

R4783_R4783

Genotypes for sample R4783_R4783

R4784_R4784

Genotypes for sample R4784_R4784

R4785_R4785

Genotypes for sample R4785_R4785

R4786_R4786

Genotypes for sample R4786_R4786

R4787_R4787

Genotypes for sample R4787_R4787

R4788_R4788

Genotypes for sample R4788_R4788

R4789_R4789

Genotypes for sample R4789_R4789

R4790_R4790

Genotypes for sample R4790_R4790

R4791_R4791

Genotypes for sample R4791_R4791

R4792_R4792

Genotypes for sample R4792_R4792

R4793_R4793

Genotypes for sample R4793_R4793

R4794_R4794

Genotypes for sample R4794_R4794

R4795_R4795

Genotypes for sample R4795_R4795

R4796_R4796

Genotypes for sample R4796_R4796

R4797_R4797

Genotypes for sample R4797_R4797

R4798_R4798

Genotypes for sample R4798_R4798

R4799_R4799

Genotypes for sample R4799_R4799

R4800_R4800

Genotypes for sample R4800_R4800

R4801_R4801

Genotypes for sample R4801_R4801

R4802_R4802

Genotypes for sample R4802_R4802

R4803_R4803

Genotypes for sample R4803_R4803

R4804_R4804

Genotypes for sample R4804_R4804

R4805_R4805

Genotypes for sample R4805_R4805

R4806_R4806

Genotypes for sample R4806_R4806

R4807_R4807

Genotypes for sample R4807_R4807

R4808_R4808

Genotypes for sample R4808_R4808

R4809_R4809

Genotypes for sample R4809_R4809

R4810_R4810

Genotypes for sample R4810_R4810

R4811_R4811

Genotypes for sample R4811_R4811

R4812_R4812

Genotypes for sample R4812_R4812

R4813_R4813

Genotypes for sample R4813_R4813

R4814_R4814

Genotypes for sample R4814_R4814

R4815_R4815

Genotypes for sample R4815_R4815

R4816_R4816

Genotypes for sample R4816_R4816

R4817_R4817

Genotypes for sample R4817_R4817

R4818_R4818

Genotypes for sample R4818_R4818

R4819_R4819

Genotypes for sample R4819_R4819

R4820_R4820

Genotypes for sample R4820_R4820

R4821_R4821

Genotypes for sample R4821_R4821

R4822_R4822

Genotypes for sample R4822_R4822

R4823_R4823

Genotypes for sample R4823_R4823

R4824_R4824

Genotypes for sample R4824_R4824

R4825_R4825

Genotypes for sample R4825_R4825

R4826_R4826

Genotypes for sample R4826_R4826

R4827_R4827

Genotypes for sample R4827_R4827

R4828_R4828

Genotypes for sample R4828_R4828

R4829_R4829

Genotypes for sample R4829_R4829

R4830_R4830

Genotypes for sample R4830_R4830

R4831_R4831

Genotypes for sample R4831_R4831

R4832_R4832

Genotypes for sample R4832_R4832

R4833_R4833

Genotypes for sample R4833_R4833

R4834_R4834

Genotypes for sample R4834_R4834

R4835_R4835

Genotypes for sample R4835_R4835

R4836_R4836

Genotypes for sample R4836_R4836

R4837_R4837

Genotypes for sample R4837_R4837

R4838_R4838

Genotypes for sample R4838_R4838

R4839_R4839

Genotypes for sample R4839_R4839

R4840_R4840

Genotypes for sample R4840_R4840

R4841_R4841

Genotypes for sample R4841_R4841

R4842_R4842

Genotypes for sample R4842_R4842

R4843_R4843

Genotypes for sample R4843_R4843

R4844_R4844

Genotypes for sample R4844_R4844

R4845_R4845

Genotypes for sample R4845_R4845

R4846_R4846

Genotypes for sample R4846_R4846

R4847_R4847

Genotypes for sample R4847_R4847

R4848_R4848

Genotypes for sample R4848_R4848

R4849_R4849

Genotypes for sample R4849_R4849

R4850_R4850

Genotypes for sample R4850_R4850

R4851_R4851

Genotypes for sample R4851_R4851

R4852_R4852

Genotypes for sample R4852_R4852

R4853_R4853

Genotypes for sample R4853_R4853

R4854_R4854

Genotypes for sample R4854_R4854

R4855_R4855

Genotypes for sample R4855_R4855

R4856_R4856

Genotypes for sample R4856_R4856

R4857_R4857

Genotypes for sample R4857_R4857

R4858_R4858

Genotypes for sample R4858_R4858

R4859_R4859

Genotypes for sample R4859_R4859

R4860_R4860

Genotypes for sample R4860_R4860

R4861_R4861

Genotypes for sample R4861_R4861

R4862_R4862

Genotypes for sample R4862_R4862

R4863_R4863

Genotypes for sample R4863_R4863

R4864_R4864

Genotypes for sample R4864_R4864

R4865_R4865

Genotypes for sample R4865_R4865

R4866_R4866

Genotypes for sample R4866_R4866

R4867_R4867

Genotypes for sample R4867_R4867

R4868_R4868

Genotypes for sample R4868_R4868

R4869_R4869

Genotypes for sample R4869_R4869

R4870_R4870

Genotypes for sample R4870_R4870

R4871_R4871

Genotypes for sample R4871_R4871

R4872_R4872

Genotypes for sample R4872_R4872

R4873_R4873

Genotypes for sample R4873_R4873

R4874_R4874

Genotypes for sample R4874_R4874

R4875_R4875

Genotypes for sample R4875_R4875

R4876_R4876

Genotypes for sample R4876_R4876

R4877_R4877

Genotypes for sample R4877_R4877

R4878_R4878

Genotypes for sample R4878_R4878

R4879_R4879

Genotypes for sample R4879_R4879

R4880_R4880

Genotypes for sample R4880_R4880

R4881_R4881

Genotypes for sample R4881_R4881

R4882_R4882

Genotypes for sample R4882_R4882

R4883_R4883

Genotypes for sample R4883_R4883

R4884_R4884

Genotypes for sample R4884_R4884

R4885_R4885

Genotypes for sample R4885_R4885

R4886_R4886

Genotypes for sample R4886_R4886

R4887_R4887

Genotypes for sample R4887_R4887

R4888_R4888

Genotypes for sample R4888_R4888

R4889_R4889

Genotypes for sample R4889_R4889

R4890_R4890

Genotypes for sample R4890_R4890

R4891_R4891

Genotypes for sample R4891_R4891

R4892_R4892

Genotypes for sample R4892_R4892

R4893_R4893

Genotypes for sample R4893_R4893

R4894_R4894

Genotypes for sample R4894_R4894

R4895_R4895

Genotypes for sample R4895_R4895

R4896_R4896

Genotypes for sample R4896_R4896

R4897_R4897

Genotypes for sample R4897_R4897

R4898_R4898

Genotypes for sample R4898_R4898

R4899_R4899

Genotypes for sample R4899_R4899

R4900_R4900

Genotypes for sample R4900_R4900

R4901_R4901

Genotypes for sample R4901_R4901

R4902_R4902

Genotypes for sample R4902_R4902

R4903_R4903

Genotypes for sample R4903_R4903

R4904_R4904

Genotypes for sample R4904_R4904

R4905_R4905

Genotypes for sample R4905_R4905

R4906_R4906

Genotypes for sample R4906_R4906

R4907_R4907

Genotypes for sample R4907_R4907

R4908_R4908

Genotypes for sample R4908_R4908

R4909_R4909

Genotypes for sample R4909_R4909

R4910_R4910

Genotypes for sample R4910_R4910

R4911_R4911

Genotypes for sample R4911_R4911

R4912_R4912

Genotypes for sample R4912_R4912

R4913_R4913

Genotypes for sample R4913_R4913

R4914_R4914

Genotypes for sample R4914_R4914

R4915_R4915

Genotypes for sample R4915_R4915

R4916_R4916

Genotypes for sample R4916_R4916

R4917_R4917

Genotypes for sample R4917_R4917

R4918_R4918

Genotypes for sample R4918_R4918

R4919_R4919

Genotypes for sample R4919_R4919

R4920_R4920

Genotypes for sample R4920_R4920

R4921_R4921

Genotypes for sample R4921_R4921

R4922_R4922

Genotypes for sample R4922_R4922

R4923_R4923

Genotypes for sample R4923_R4923

R4924_R4924

Genotypes for sample R4924_R4924

R4925_R4925

Genotypes for sample R4925_R4925

R4926_R4926

Genotypes for sample R4926_R4926

R4927_R4927

Genotypes for sample R4927_R4927

R4928_R4928

Genotypes for sample R4928_R4928

R4929_R4929

Genotypes for sample R4929_R4929

R4930_R4930

Genotypes for sample R4930_R4930

R4931_R4931

Genotypes for sample R4931_R4931

R4932_R4932

Genotypes for sample R4932_R4932

R4933_R4933

Genotypes for sample R4933_R4933

R4934_R4934

Genotypes for sample R4934_R4934

R4935_R4935

Genotypes for sample R4935_R4935

R4936_R4936

Genotypes for sample R4936_R4936

R4937_R4937

Genotypes for sample R4937_R4937

R4938_R4938

Genotypes for sample R4938_R4938

R4939_R4939

Genotypes for sample R4939_R4939

R4940_R4940

Genotypes for sample R4940_R4940

R4941_R4941

Genotypes for sample R4941_R4941

R4942_R4942

Genotypes for sample R4942_R4942

R4943_R4943

Genotypes for sample R4943_R4943

R4944_R4944

Genotypes for sample R4944_R4944

R4945_R4945

Genotypes for sample R4945_R4945

R4946_R4946

Genotypes for sample R4946_R4946

R4947_R4947

Genotypes for sample R4947_R4947

R4948_R4948

Genotypes for sample R4948_R4948

R4949_R4949

Genotypes for sample R4949_R4949

R4950_R4950

Genotypes for sample R4950_R4950

R4951_R4951

Genotypes for sample R4951_R4951

R4952_R4952

Genotypes for sample R4952_R4952

R4953_R4953

Genotypes for sample R4953_R4953

R4954_R4954

Genotypes for sample R4954_R4954

R4955_R4955

Genotypes for sample R4955_R4955

R4956_R4956

Genotypes for sample R4956_R4956

R4957_R4957

Genotypes for sample R4957_R4957

R4958_R4958

Genotypes for sample R4958_R4958

R4959_R4959

Genotypes for sample R4959_R4959

R4960_R4960

Genotypes for sample R4960_R4960

R4961_R4961

Genotypes for sample R4961_R4961

R4962_R4962

Genotypes for sample R4962_R4962

R4964_R4964

Genotypes for sample R4964_R4964

R4965_R4965

Genotypes for sample R4965_R4965

R4966_R4966

Genotypes for sample R4966_R4966

R4967_R4967

Genotypes for sample R4967_R4967

R4968_R4968

Genotypes for sample R4968_R4968

R4969_R4969

Genotypes for sample R4969_R4969

R4970_R4970

Genotypes for sample R4970_R4970

R4971_R4971

Genotypes for sample R4971_R4971

R4972_R4972

Genotypes for sample R4972_R4972

R4973_R4973

Genotypes for sample R4973_R4973

R4974_R4974

Genotypes for sample R4974_R4974

R4975_R4975

Genotypes for sample R4975_R4975

R4976_R4976

Genotypes for sample R4976_R4976

R4977_R4977

Genotypes for sample R4977_R4977

R4978_R4978

Genotypes for sample R4978_R4978

R4979_R4979

Genotypes for sample R4979_R4979

R4980_R4980

Genotypes for sample R4980_R4980

R4981_R4981

Genotypes for sample R4981_R4981

R4982_R4982

Genotypes for sample R4982_R4982

R4983_R4983

Genotypes for sample R4983_R4983

R4984_R4984

Genotypes for sample R4984_R4984

R4985_R4985

Genotypes for sample R4985_R4985

R4986_R4986

Genotypes for sample R4986_R4986

R4987_R4987

Genotypes for sample R4987_R4987

R4988_R4988

Genotypes for sample R4988_R4988

R4989_R4989

Genotypes for sample R4989_R4989

R4990_R4990

Genotypes for sample R4990_R4990

R4991_R4991

Genotypes for sample R4991_R4991

R4992_R4992

Genotypes for sample R4992_R4992

R4993_R4993

Genotypes for sample R4993_R4993

R4994_R4994

Genotypes for sample R4994_R4994

R4995_R4995

Genotypes for sample R4995_R4995

R4996_R4996

Genotypes for sample R4996_R4996

R4997_R4997

Genotypes for sample R4997_R4997

R4998_R4998

Genotypes for sample R4998_R4998

R4999_R4999

Genotypes for sample R4999_R4999

R5000_R5000

Genotypes for sample R5000_R5000

R5001_R5001

Genotypes for sample R5001_R5001

R5002_R5002

Genotypes for sample R5002_R5002

R5003_R5003

Genotypes for sample R5003_R5003

R5004_R5004

Genotypes for sample R5004_R5004

R5005_R5005

Genotypes for sample R5005_R5005

R5006_R5006

Genotypes for sample R5006_R5006

R5007_R5007

Genotypes for sample R5007_R5007

R5008_R5008

Genotypes for sample R5008_R5008

R5009_R5009

Genotypes for sample R5009_R5009

R5010_R5010

Genotypes for sample R5010_R5010

R5011_R5011

Genotypes for sample R5011_R5011

R5012_R5012

Genotypes for sample R5012_R5012

R5013_R5013

Genotypes for sample R5013_R5013

R5014_R5014

Genotypes for sample R5014_R5014

R5015_R5015

Genotypes for sample R5015_R5015

R5016_R5016

Genotypes for sample R5016_R5016

R5017_R5017

Genotypes for sample R5017_R5017

R5018_R5018

Genotypes for sample R5018_R5018

R5019_R5019

Genotypes for sample R5019_R5019

R5020_R5020

Genotypes for sample R5020_R5020

R5021_R5021

Genotypes for sample R5021_R5021

R5022_R5022

Genotypes for sample R5022_R5022

R5023_R5023

Genotypes for sample R5023_R5023

R5024_R5024

Genotypes for sample R5024_R5024

R5025_R5025

Genotypes for sample R5025_R5025

R5026_R5026

Genotypes for sample R5026_R5026

R5027_R5027

Genotypes for sample R5027_R5027

R5028_R5028

Genotypes for sample R5028_R5028

R5029_R5029

Genotypes for sample R5029_R5029

R5030_R5030

Genotypes for sample R5030_R5030

R5031_R5031

Genotypes for sample R5031_R5031

R5032_R5032

Genotypes for sample R5032_R5032

R5033_R5033

Genotypes for sample R5033_R5033

R5034_R5034

Genotypes for sample R5034_R5034

R5035_R5035

Genotypes for sample R5035_R5035

R5036_R5036

Genotypes for sample R5036_R5036

R5037_R5037

Genotypes for sample R5037_R5037

R5038_R5038

Genotypes for sample R5038_R5038

R5039_R5039

Genotypes for sample R5039_R5039

R5040_R5040

Genotypes for sample R5040_R5040

R5041_R5041

Genotypes for sample R5041_R5041

R5042_R5042

Genotypes for sample R5042_R5042

R5043_R5043

Genotypes for sample R5043_R5043

R5044_R5044

Genotypes for sample R5044_R5044

R5045_R5045

Genotypes for sample R5045_R5045

R5046_R5046

Genotypes for sample R5046_R5046

R5047_R5047

Genotypes for sample R5047_R5047

R5048_R5048

Genotypes for sample R5048_R5048

R5049_R5049

Genotypes for sample R5049_R5049

R5050_R5050

Genotypes for sample R5050_R5050

R5051_R5051

Genotypes for sample R5051_R5051

R5052_R5052

Genotypes for sample R5052_R5052

R5053_R5053

Genotypes for sample R5053_R5053

R5054_R5054

Genotypes for sample R5054_R5054

R5055_R5055

Genotypes for sample R5055_R5055

R5056_R5056

Genotypes for sample R5056_R5056

R5057_R5057

Genotypes for sample R5057_R5057

R5058_R5058

Genotypes for sample R5058_R5058

R5059_R5059

Genotypes for sample R5059_R5059

R5060_R5060

Genotypes for sample R5060_R5060

R5061_R5061

Genotypes for sample R5061_R5061

R5062_R5062

Genotypes for sample R5062_R5062

R5063_R5063

Genotypes for sample R5063_R5063

R5064_R5064

Genotypes for sample R5064_R5064

R5065_R5065

Genotypes for sample R5065_R5065

R5066_R5066

Genotypes for sample R5066_R5066

R5067_R5067

Genotypes for sample R5067_R5067

R5068_R5068

Genotypes for sample R5068_R5068

R5069_R5069

Genotypes for sample R5069_R5069

R5070_R5070

Genotypes for sample R5070_R5070

R5071_R5071

Genotypes for sample R5071_R5071

R5072_R5072

Genotypes for sample R5072_R5072

R5073_R5073

Genotypes for sample R5073_R5073

R5074_R5074

Genotypes for sample R5074_R5074

R5075_R5075

Genotypes for sample R5075_R5075

R5076_R5076

Genotypes for sample R5076_R5076

R5077_R5077

Genotypes for sample R5077_R5077

R5078_R5078

Genotypes for sample R5078_R5078

R5079_R5079

Genotypes for sample R5079_R5079

R5080_R5080

Genotypes for sample R5080_R5080

R5081_R5081

Genotypes for sample R5081_R5081

R5082_R5082

Genotypes for sample R5082_R5082

R5083_R5083

Genotypes for sample R5083_R5083

R5084_R5084

Genotypes for sample R5084_R5084

R5085_R5085

Genotypes for sample R5085_R5085

R5086_R5086

Genotypes for sample R5086_R5086

R5087_R5087

Genotypes for sample R5087_R5087

R5088_R5088

Genotypes for sample R5088_R5088

R5089_R5089

Genotypes for sample R5089_R5089

R5091_R5091

Genotypes for sample R5091_R5091

R5094_R5094

Genotypes for sample R5094_R5094

R5095_R5095

Genotypes for sample R5095_R5095

R5097_R5097

Genotypes for sample R5097_R5097

R5098_R5098

Genotypes for sample R5098_R5098

R5099_R5099

Genotypes for sample R5099_R5099

R5100_R5100

Genotypes for sample R5100_R5100

R5101_R5101

Genotypes for sample R5101_R5101

R5102_R5102

Genotypes for sample R5102_R5102

R5103_R5103

Genotypes for sample R5103_R5103

R5104_R5104

Genotypes for sample R5104_R5104

R5105_R5105

Genotypes for sample R5105_R5105

R5106_R5106

Genotypes for sample R5106_R5106

R5107_R5107

Genotypes for sample R5107_R5107

R5108_R5108

Genotypes for sample R5108_R5108

R5109_R5109

Genotypes for sample R5109_R5109

R5110_R5110

Genotypes for sample R5110_R5110

R5111_R5111

Genotypes for sample R5111_R5111

R5112_R5112

Genotypes for sample R5112_R5112

R5114_R5114

Genotypes for sample R5114_R5114

R5115_R5115

Genotypes for sample R5115_R5115

R5116_R5116

Genotypes for sample R5116_R5116

R5117_R5117

Genotypes for sample R5117_R5117

R5118_R5118

Genotypes for sample R5118_R5118

R5119_R5119

Genotypes for sample R5119_R5119

R5120_R5120

Genotypes for sample R5120_R5120

R5121_R5121

Genotypes for sample R5121_R5121

R5122_R5122

Genotypes for sample R5122_R5122

R5123_R5123

Genotypes for sample R5123_R5123

R5124_R5124

Genotypes for sample R5124_R5124

R5125_R5125

Genotypes for sample R5125_R5125

R5126_R5126

Genotypes for sample R5126_R5126

R5127_R5127

Genotypes for sample R5127_R5127

R5128_R5128

Genotypes for sample R5128_R5128

R5129_R5129

Genotypes for sample R5129_R5129

R5130_R5130

Genotypes for sample R5130_R5130

R5131_R5131

Genotypes for sample R5131_R5131

R5132_R5132

Genotypes for sample R5132_R5132

R5133_R5133

Genotypes for sample R5133_R5133

R5134_R5134

Genotypes for sample R5134_R5134

R5135_R5135

Genotypes for sample R5135_R5135

R5136_R5136

Genotypes for sample R5136_R5136

R5137_R5137

Genotypes for sample R5137_R5137

R5138_R5138

Genotypes for sample R5138_R5138

R5139_R5139

Genotypes for sample R5139_R5139

R5140_R5140

Genotypes for sample R5140_R5140

R5141_R5141

Genotypes for sample R5141_R5141

R5142_R5142

Genotypes for sample R5142_R5142

R5143_R5143

Genotypes for sample R5143_R5143

R5144_R5144

Genotypes for sample R5144_R5144

R5145_R5145

Genotypes for sample R5145_R5145

R5146_R5146

Genotypes for sample R5146_R5146

R5147_R5147

Genotypes for sample R5147_R5147

R5148_R5148

Genotypes for sample R5148_R5148

R5149_R5149

Genotypes for sample R5149_R5149

R5150_R5150

Genotypes for sample R5150_R5150

R5151_R5151

Genotypes for sample R5151_R5151

R5152_R5152

Genotypes for sample R5152_R5152

R5153_R5153

Genotypes for sample R5153_R5153

R5154_R5154

Genotypes for sample R5154_R5154

R5155_R5155

Genotypes for sample R5155_R5155

R5156_R5156

Genotypes for sample R5156_R5156

R5157_R5157

Genotypes for sample R5157_R5157

R5158_R5158

Genotypes for sample R5158_R5158

R5159_R5159

Genotypes for sample R5159_R5159

R5160_R5160

Genotypes for sample R5160_R5160

R5161_R5161

Genotypes for sample R5161_R5161

Source

Wu, D., Liang, Z., Yan, T., Xu, Y., Xuan, L., Tang, J., Zhou, G., Lohwasser, U., Hua, S., Wang, H., Chen, X., Wang, Q., Zhu, L., Maodzeka, A., Hussain, N., Li, Z., Li, X., Shamsi, I. H., Jilani, G., … Jiang, L. (2019). Whole-Genome Resequencing of a Worldwide Collection of Rapeseed Accessions Reveals the Genetic Basis of Ecotype Divergence. Molecular Plant, 12(1), 30–43. https://doi.org/10.1016/j.molp.2018.11.007