\documentclass{chapman}
%%% copy Sweave.sty definitions
%%% keeps `sweave' from adding `\usepackage{Sweave}': DO NOT REMOVE
%\usepackage{Sweave}
\RequirePackage[T1]{fontenc}
\RequirePackage{graphicx,ae,fancyvrb}
\IfFileExists{upquote.sty}{\RequirePackage{upquote}}{}
\usepackage{relsize}
\DefineVerbatimEnvironment{Sinput}{Verbatim}{}
\DefineVerbatimEnvironment{Soutput}{Verbatim}{fontfamily=courier,
fontshape=it,
fontsize=\relsize{-1}}
\DefineVerbatimEnvironment{Scode}{Verbatim}{}
\newenvironment{Schunk}{}{}
%%% environment for raw output
\newcommand{\SchunkRaw}{\renewenvironment{Schunk}{}{}
\DefineVerbatimEnvironment{Soutput}{Verbatim}{fontfamily=courier,
fontshape=it,
fontsize=\small}
\rawSinput
}
%%% environment for labeled output
\newcommand{\nextcaption}{}
\newcommand{\SchunkLabel}{
\renewenvironment{Schunk}{\begin{figure}[ht] }{\caption{\nextcaption}
\end{figure} }
\DefineVerbatimEnvironment{Sinput}{Verbatim}{frame = topline}
\DefineVerbatimEnvironment{Soutput}{Verbatim}{frame = bottomline,
samepage = true,
fontfamily=courier,
fontshape=it,
fontsize=\relsize{-1}}
}
%%% S code with line numbers
\DefineVerbatimEnvironment{Sinput}
{Verbatim}
{
%% numbers=left
}
\newcommand{\numberSinput}{
\DefineVerbatimEnvironment{Sinput}{Verbatim}{numbers=left}
}
\newcommand{\rawSinput}{
\DefineVerbatimEnvironment{Sinput}{Verbatim}{}
}
%%% R / System symbols
\newcommand{\R}{\textsf{R}}
\newcommand{\rR}{{R}}
\renewcommand{\S}{\textsf{S}}
\newcommand{\SPLUS}{\textsf{S-PLUS}}
\newcommand{\rSPLUS}{{S-PLUS}}
\newcommand{\SPSS}{\textsf{SPSS}}
\newcommand{\EXCEL}{\textsf{Excel}}
\newcommand{\ACCESS}{\textsf{Access}}
\newcommand{\SQL}{\textsf{SQL}}
%%\newcommand{\Rpackage}[1]{\hbox{\rm\textit{#1}}}
%%\newcommand{\Robject}[1]{\hbox{\rm\texttt{#1}}}
%%\newcommand{\Rclass}[1]{\hbox{\rm\textit{#1}}}
%%\newcommand{\Rcmd}[1]{\hbox{\rm\texttt{#1}}}
\newcommand{\Rpackage}[1]{\index{#1 package@{\fontseries{b}\selectfont #1} package} {\fontseries{b}\selectfont #1}}
\newcommand{\rpackage}[1]{{\fontseries{b}\selectfont #1}}
\newcommand{\Robject}[1]{\texttt{#1}}
\newcommand{\Rclass}[1]{\index{#1 class@\textit{#1} class}\textit{#1}}
\newcommand{\Rcmd}[1]{\index{#1 function@\texttt{#1} function}\texttt{#1}}
\newcommand{\Roperator}[1]{\texttt{#1}}
\newcommand{\Rarg}[1]{\texttt{#1}}
\newcommand{\Rlevel}[1]{\texttt{#1}}
%%% other symbols
\newcommand{\file}[1]{\hbox{\rm\texttt{#1}}}
%%\newcommand{\stress}[1]{\index{#1}\textit{#1}}
\newcommand{\stress}[1]{\textit{#1}}
\newcommand{\booktitle}[1]{\textit{#1}} %%'
%%% Math symbols
\usepackage{amstext}
\usepackage{amsmath}
\newcommand{\E}{\mathsf{E}}
\newcommand{\Var}{\mathsf{Var}}
\newcommand{\Cov}{\mathsf{Cov}}
\newcommand{\Cor}{\mathsf{Cor}}
\newcommand{\x}{\mathbf{x}}
\newcommand{\y}{\mathbf{y}}
\renewcommand{\a}{\mathbf{a}}
\newcommand{\W}{\mathbf{W}}
\newcommand{\C}{\mathbf{C}}
\renewcommand{\H}{\mathbf{H}}
\newcommand{\X}{\mathbf{X}}
\newcommand{\B}{\mathbf{B}}
\newcommand{\V}{\mathbf{V}}
\newcommand{\I}{\mathbf{I}}
\newcommand{\D}{\mathbf{D}}
\newcommand{\bS}{\mathbf{S}}
\newcommand{\N}{\mathcal{N}}
\renewcommand{\L}{L}
\renewcommand{\P}{\mathsf{P}}
\newcommand{\K}{\mathbf{K}}
\newcommand{\m}{\mathbf{m}}
\newcommand{\argmin}{\operatorname{argmin}\displaylimits}
\newcommand{\argmax}{\operatorname{argmax}\displaylimits}
\newcommand{\bx}{\mathbf{x}}
\newcommand{\bbeta}{\mathbf{\beta}}
%%% links
\usepackage{hyperref}
\hypersetup{%
pdftitle = {A Handbook of Statistical Analyses Using R (3rd Edition)},
pdfsubject = {Book},
pdfauthor = {Torsten Hothorn and Brian S. Everitt},
colorlinks = {black},
linkcolor = {black},
citecolor = {black},
urlcolor = {black},
hyperindex = {true},
linktocpage = {true},
}
%%% captions & tables
%% : conflics with figure definition in chapman.cls
%%\usepackage[format=hang,margin=10pt,labelfont=bf]{caption}
%%
\usepackage{longtable}
\usepackage[figuresright]{rotating}
%%% R symbol in chapter 1
\usepackage{wrapfig}
%%% Bibliography
\usepackage[round,comma]{natbib}
\renewcommand{\refname}{References \addcontentsline{toc}{chapter}{References}}
\citeindexfalse
%%% texi2dvi complains that \newblock is undefined, hm...
\def\newblock{\hskip .11em plus .33em minus .07em}
%%% Example sections
\newcounter{exercise}[chapter]
\setcounter{exercise}{0}
\newcommand{\exercise}{\stepcounter{exercise} \item{Ex.~\arabic{chapter}.\arabic{exercise} }}
%% URLs
\newcommand{\curl}[1]{\begin{center} \url{#1} \end{center}}
%%% for manual corrections
%\renewcommand{\baselinestretch}{2}
%%% plot sizes
\setkeys{Gin}{width=0.95\textwidth}
%%% color
\usepackage{color}
%%% hyphenations
\hyphenation{drop-out}
\hyphenation{mar-gi-nal}
%%% new bidirectional quotes need
\usepackage[utf8]{inputenc}
%\usepackage{setspace}
\definecolor{sidebox_todo}{rgb}{1,1,0.2}
\newcommand{\todo}[1]{
\hspace{0pt}%
\marginpar{%
\fcolorbox{black}{sidebox_todo}{%
\parbox{\marginparwidth} {
\raggedright\sffamily\footnotesize{TODO: #1}%
}
}%
}
}
\begin{document}
%% Title page
\title{A Handbook of Statistical Analyses Using \R{} --- 3rd Edition}
\author{Torsten Hothorn and Brian S. Everitt}
\maketitle
%%\VignetteIndexEntry{Errata}
\setcounter{chapter}{21}
\SweaveOpts{prefix.string=figures/HSAUR,eps=FALSE,keep.source=TRUE}
<>=
rm(list = ls())
s <- search()[-1]
s <- s[-match(c("package:base", "package:stats", "package:graphics", "package:grDevices",
"package:utils", "package:datasets", "package:methods", "Autoloads"), s)]
if (length(s) > 0) sapply(s, detach, character.only = TRUE)
if (!file.exists("tables")) dir.create("tables")
if (!file.exists("figures")) dir.create("figures")
set.seed(290875)
options(prompt = "R> ", continue = "+ ",
width = 63, # digits = 4,
show.signif.stars = FALSE,
SweaveHooks = list(leftpar = function()
par(mai = par("mai") * c(1, 1.05, 1, 1)),
bigleftpar = function()
par(mai = par("mai") * c(1, 1.7, 1, 1))))
HSAURpkg <- require("HSAUR3")
if (!HSAURpkg) stop("cannot load package ", sQuote("HSAUR3"))
rm(HSAURpkg)
### hm, R-2.4.0 --vanilla seems to need this
a <- Sys.setlocale("LC_ALL", "C")
###
book <- TRUE
refs <- cbind(c("AItR", "DAGD", "SI", "CI", "ANOVA", "MLR", "GLM",
"DE", "RP", "GAM", "SA", "ALDI", "ALDII", "SIMC", "MA", "PCA",
"MDS", "CA"), 1:18)
ch <- function(x) {
ch <- refs[which(refs[,1] == x),]
if (book) {
return(paste("Chapter~\\\\ref{", ch[1], "}", sep = ""))
} else {
return(paste("Chapter~", ch[2], sep = ""))
}
}
if (file.exists("deparse.R"))
source("deparse.R")
setHook(packageEvent("lattice", "attach"), function(...) {
lattice.options(default.theme =
function()
standard.theme("pdf", color = FALSE))
})
@
\pagestyle{headings}
<>=
book <- FALSE
@
\chapter[Errata]{Errata}
%\bibliographystyle{LaTeXBibTeX/refstyle}
%\bibliography{LaTeXBibTeX/HSAUR}
\end{document}