Type: | Package |
Title: | A Curated Collection of Biodiversity and Species Datasets and Utilities |
Version: | 0.1.0 |
Maintainer: | Juan David Monroy <monroyjuandavid773@gmail.com> |
Description: | Provides a curated collection of biodiversity and species-related datasets (birds, plants, reptiles, turtles, mammals, bees, marine data and related biological measurements), together with small utilities to load and explore them. The package gathers data sourced from public repositories (including Kaggle and well-known ecological/biological R packages) and standardizes access for researchers, educators, and data analysts working on biodiversity, biogeography, ecology and comparative biology. It aims to simplify reproducible workflows by packaging commonly used example datasets and metadata so they can be easily inspected, visualized, and used for teaching, testing, and prototyping analyses. |
License: | GPL-3 |
URL: | https://github.com/Monroy31039/BioWorld, https://Monroy31039.github.io/BioWorld/ |
BugReports: | https://github.com/Monroy31039/BioWorld/issues |
Encoding: | UTF-8 |
LazyData: | true |
Suggests: | ggplot2, dplyr, testthat (≥ 3.0.0), knitr, rmarkdown |
RoxygenNote: | 7.3.2 |
Config/testthat/edition: | 3 |
VignetteBuilder: | knitr |
NeedsCompilation: | no |
Packaged: | 2025-09-20 22:03:03 UTC; monro |
Author: | Juan David Monroy [aut, cre] |
Depends: | R (≥ 3.5.0) |
Repository: | CRAN |
Date/Publication: | 2025-09-27 08:10:02 UTC |
BioWorldR: A Curated Collection of Biodiversity and Species Datasets and Utilities
Description
This package provides a curated collection of biodiversity and species-related datasets (birds, plants, reptiles, turtles, mammals, bees, marine data and related biological measurements), together with small utilities to load and explore them.
Details
BioWorldR: A Curated Collection of Biodiversity and Species Datasets and Utilities
A Curated Collection of Biodiversity and Species Datasets and Utilities
Author(s)
Maintainer: Juan David Monroy monroyjuandavid773@gmail.com
See Also
Useful links:
Great Ape Skull Landmark Data
Description
This dataset, Apes_list, is a list containing landmark data of great ape skulls. It includes 8 landmarks in 2 dimensions for 167 individuals. The dataset consists of two elements: the landmark coordinates and the group factor indicating species. All values are preserved as in the original source, with no modifications.
Usage
data(Apes_list)
Format
A list with 2 elements:
- x
Array of landmark coordinates (numeric) with dimensions 8 landmarks × 2 dimensions × 167 individuals
- group
Factor indicating the species or group of each individual
Details
The dataset name has been kept as 'Apes_list' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The original content has not been modified in any way.
Source
Data taken from the shapes package version 1.2.7
Bee Occurrence Records
Description
The 'Bees_data' dataset contains occurrence records of bee species, including detailed taxonomy, geographic coordinates, collection metadata, and data quality flags. It is designed for biodiversity, ecology, and conservation studies involving bee populations.
Usage
data(Bees_data)
Format
A tibble with 105 observations and 124 variables:
- database_id
Unique database identifier (character)
- scientificName
Full scientific name (character)
- family
Taxonomic family (character)
- subfamily
Taxonomic subfamily (character)
- genus
Taxonomic genus (character)
- subgenus
Taxonomic subgenus (character)
- subspecies
Taxonomic subspecies (character)
- species
Species name (character)
- specificEpithet
Specific epithet (character)
- infraspecificEpithet
Infraspecific epithet (character)
- acceptedNameUsage
Accepted taxonomic name (character)
- taxonRank
Rank of the taxon (character)
- scientificNameAuthorship
Authority for the name (character)
- decimalLatitude
Geographic latitude (numeric)
- decimalLongitude
Geographic longitude (numeric)
- stateProvince
Administrative region (character)
- continent
Continent name (character)
- locality
Locality description (character)
- eventDate
Date of collection event (date/character)
- year
Year of collection (integer)
- basisOfRecord
Type of record (e.g., specimen, observation) (character)
- occurrenceStatus
Occurrence status (character)
- recordedBy
Collector(s) name(s) (character)
- institutionCode
Code of institution holding the record (character)
- datasetName
Name of the source dataset (character)
- gbifID
Global Biodiversity Information Facility record ID (character)
- spatiallyValid
Spatial validity flag (logical)
- coordinateUncertaintyInMeters
Uncertainty of coordinates (numeric)
- hasGeospatialIssues
Flag for geospatial issues (logical)
- duplicateStatus
Duplicate record flag (character)
- .GBIFflags
GBIF quality control flags (character)
- ...
Additional metadata on taxonomy, collection, and validation flags (90+ fields)
Details
This dataset is rich in metadata and includes validation flags such as:
Coordinate validity and uncertainty
Taxonomic cleaning and synonym resolution
Record duplication and licensing status
Event and occurrence metadata
Source
Extracted from the **BeeBDC** package, version 1.3.0.
Bird Species Recorded in Peru (Updated 2025 Version)
Description
This dataset, Birds_Peru, is a tibble containing information on bird species recorded in Peru, based on the most recent taxonomic revisions by the South American Checklist Committee (SACC). The dataset includes 1,914 observations and 6 variables, covering taxonomic order, family, scientific names, common names in English and Spanish, and conservation or occurrence status. All values are preserved as in the original source, with no modifications.
Usage
data(Birds_Peru)
Format
A tibble with 1,914 observations and 6 variables:
- order_name
Taxonomic order (character string)
- family_name
Taxonomic family (character string)
- scientific_name
Scientific name of the species (character string)
- english_name
Common name in English (character string)
- spanish_name
Common name in Spanish (character string)
- status
Conservation or occurrence status (character string)
Details
The dataset name has been kept as 'Birds_Peru' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The original content has not been modified in any way.
Source
Data taken from the avesperu package version 0.0.6
Brain and Body Weight Data for Animals
Description
This dataset, Brain_animals, is a tibble containing brain and body weight measurements for 28 animal species, useful for allometric and comparative studies. The dataset includes 28 observations and 3 variables. All values are preserved as in the original source, with no modifications.
Usage
data(Brain_animals)
Format
A tibble with 28 observations and 3 variables:
- species
Species name (character)
- bodyweight
Body weight of the species (numeric)
- brainweight
Brain weight of the species (numeric)
Details
The dataset name has been kept as 'Brain_animals' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The original content has not been modified.
Source
Data taken from the BSDA package version 1.2.2
Female Chimpanzee Skull Landmark Data
Description
This dataset, Chimp_f, is an array containing landmark data of female chimpanzee skulls. It includes 8 landmarks in 2 dimensions for 26 individuals. All values are preserved as in the original source, with no modifications.
Usage
data(Chimp_f)
Format
An array with dimensions 8 × 2 × 26:
- [1:8, 1:2, 1:26]
Numeric values representing 8 landmarks in 2 dimensions for 26 female chimpanzee skulls
Details
The dataset name has been kept as 'Chimp_f' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The original content has not been modified in any way.
Source
Data taken from the shapes package version 1.2.7
Male Chimpanzee Skull Landmark Data
Description
This dataset, Chimp_m, is an array containing landmark data of male chimpanzee skulls. It includes 8 landmarks in 2 dimensions for 28 individuals. All values are preserved as in the original source, with no modifications.
Usage
data(Chimp_m)
Format
An array with dimensions 8 × 2 × 28:
- [1:8, 1:2, 1:28]
Numeric values representing 8 landmarks in 2 dimensions for 28 male chimpanzee skulls
Details
The dataset name has been kept as 'Chimp_m' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The original content has not been modified in any way.
Source
Data taken from the shapes package version 1.2.7
Morphological Data of Crabs
Description
This dataset, Crab_morpho, is a data frame containing morphological measurements of crabs. The dataset includes 173 observations and 5 variables, covering sex, color, spine count, body width, and weight. All values are preserved as in the original source, with no modifications.
Usage
data(Crab_morpho)
Format
A data frame with 173 observations and 5 variables:
- color
Color score of the crab (integer)
- spine
Number of spines (integer)
- weight
Body weight (numeric)
- width
Body width (numeric)
- satellites
Sex of the crab (integer)
Details
The dataset name has been kept as 'Crab_morpho' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The original content has not been modified.
Source
Data taken from the condvis package version 0.5-1
Dog Breed Life History Data
Description
This dataset, DogsLife_df, is a data frame containing life history information for various dog breeds. The dataset includes 73 observations and 5 variables, covering breed, average weight, litter size, birth weight, and lifespan. All values are preserved as in the original source, with no modifications.
Usage
data(DogsLife_df)
Format
A data frame with 73 observations and 5 variables:
- Breed
Name of the dog breed (character)
- Weight
Average weight of the breed (numeric)
- LitterSize
Average litter size (numeric)
- BirthWeight
Average birth weight (numeric)
- Lifespan
Average lifespan in years (numeric)
Details
The dataset name has been kept as 'DogsLife_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified.
Source
Data taken from the SRMData package version 1.0.2
Elephant Morphometric Measurements
Description
This dataset, Elephants_df, is a data frame containing physical measurements of elephants. The dataset includes 1,470 observations and 5 variables, covering sex, age, chest circumference, height, and mass. All values are preserved as in the original source, with no modifications.
Usage
data(Elephants_df)
Format
A data frame with 1,470 observations and 5 variables:
- Sex
Sex of the elephant (character)
- Age
Age in years (numeric)
- Chest
Chest circumference (numeric)
- Height
Height (numeric)
- Mass
Mass (numeric)
Details
The dataset name has been kept as 'Elephants_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified.
Source
Data taken from the SRMData package version 1.0.2
Extinct Mammals Data
Description
This dataset, Extinct_mammals_tbl_df, is a data frame containing information on 85 extinct mammal species. It includes common and binomial names, taxonomic order, date of extinction, former geographic range, and a flag indicating the presence of a picture. The data were read from a CSV file and no modifications have been made.
Usage
data(Extinct_mammals_tbl_df)
Format
A data frame with 85 observations and 6 variables:
- Common.name
Common name of the species (character)
- Binomial.name
Scientific (binomial) name of the species (character)
- Order
Taxonomic order (character)
- Date.of.extinction
Date or year of extinction (character)
- Former.range
Former geographic range (character)
- Picture
Logical flag indicating presence of a picture (logical)
Details
The dataset name has been kept as 'Extinct_mammals_tbl_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The suffix 'tbl_df' indicates that the dataset is a data frame/tibble. The original content has not been modified.
Source
Data taken from Kaggle: https://www.kaggle.com/datasets/battle11king/extinct-mammals
Metallogorgia melanotrichos Sampling Locations
Description
This dataset, Fish_metallo, is a data frame containing sampling locations for the deep-sea octocoral species Metallogorgia melanotrichos. The dataset includes 38 observations and 3 variables, covering longitude, latitude, and depth in meters. All values are preserved as in the original source, with no modifications.
Usage
data(Fish_metallo)
Format
A data frame with 38 observations and 3 variables:
- lon
Longitude of sampling location (numeric)
- lat
Latitude of sampling location (numeric)
- depth
Depth of sampling location in meters (integer)
Details
The dataset name has been kept as 'Fish_metallo' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The suffix 'df' is not used here because the dataset is identified by its function within BioWorldR. The original content has not been modified.
Source
Data taken from the marmap package version 1.0.12
Germline Sequence Information for Various Species
Description
This dataset, Germ_lines_df, is a data frame containing germline sequence information for multiple species. The dataset includes 7,285 observations and 8 variables, covering the nucleotide sequence, gene names, species, chain type, accession number, official species name, source, and strain. All values are preserved as in the original source, with no modifications.
Usage
data(Germ_lines_df)
Format
A data frame with 7,285 observations and 8 variables:
- sequence
Germline nucleotide sequence (factor)
- names
Gene name(s) (character string)
- species
Species code or name (character string)
- chain
Chain type (factor)
- accession
Accession number (factor)
- species_name_official
Official species name (character string)
- source
Source of the germline sequence (character string)
- strain
Strain or line information (character string)
Details
The dataset name has been kept as 'Germ_lines_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified.
Source
Data taken from the VDJgermlines package version 0.1
Female Gorilla Skull Landmark Data
Description
This dataset, Gorilla_f, is an array containing landmark data of female gorilla skulls. It includes 8 landmarks in 2 dimensions for 30 individuals. All values are preserved as in the original source, with no modifications.
Usage
data(Gorilla_f)
Format
An array with dimensions 8 × 2 × 30:
- [1:8, 1:2, 1:30]
Numeric values representing 8 landmarks in 2 dimensions for 30 female gorilla skulls
Details
The dataset name has been kept as 'Gorilla_f' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The original content has not been modified in any way.
Source
Data taken from the shapes package version 1.2.7
Male Gorilla Skull Landmark Data
Description
This dataset, Gorilla_m, is an array containing landmark data of male gorilla skulls. It includes 8 landmarks in 2 dimensions for 29 individuals. All values are preserved as in the original source, with no modifications.
Usage
data(Gorilla_m)
Format
An array with dimensions 8 × 2 × 29:
- [1:8, 1:2, 1:29]
Numeric values representing 8 landmarks in 2 dimensions for 29 male gorilla skulls
Details
The dataset name has been kept as 'Gorilla_m' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The original content has not been modified in any way.
Source
Data taken from the shapes package version 1.2.7
Gorilla Chest-beating Rates and Physical Measurements
Description
This dataset, Gorillas_df, is a data frame containing measurements related to chest-beating behavior in gorillas. The dataset includes 25 observations and 7 variables, covering physical measurements, focal time, age, sex, and number of chest beats. All values are preserved as in the original source, with no modifications.
Usage
data(Gorillas_df)
Format
A data frame with 25 observations and 7 variables:
- BackBreadth
Back breadth measurement (numeric)
- ChestBeatRate
Rate of chest beats (numeric)
- FocalTime
Focal observation time (numeric)
- Male
Sex of the individual (character)
- NoChestBeats
Number of chest beats observed (integer)
- Age
Age of the individual (numeric)
- Age20
Indicator if age is above 20 (character)
Details
The dataset name has been kept as 'Gorillas_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified.
Source
Data taken from the SRMData package version 1.0.2
Female Orangutan Skull Landmark Data
Description
This dataset, Orang_f, is an array containing landmark data of female orangutan skulls. It includes 8 landmarks in 2 dimensions for 24 individuals. All values are preserved as in the original source, with no modifications.
Usage
data(Orang_f)
Format
An array with dimensions 8 × 2 × 24:
- [1:8, 1:2, 1:24]
Numeric values representing 8 landmarks in 2 dimensions for 24 female orangutan skulls
Details
The dataset name has been kept as 'Orang_f' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The original content has not been modified in any way.
Source
Data taken from the shapes package version 1.2.7
Male Orangutan Skull Landmark Data
Description
This dataset, Orang_m, is an array containing landmark data of male orangutan skulls. It includes 8 landmarks in 2 dimensions for 30 individuals. All values are preserved as in the original source, with no modifications.
Usage
data(Orang_m)
Format
An array with dimensions 8 × 2 × 30:
- [1:8, 1:2, 1:30]
Numeric values representing 8 landmarks in 2 dimensions for 30 male orangutan skulls
Details
The dataset name has been kept as 'Orang_m' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The original content has not been modified in any way.
Source
Data taken from the shapes package version 1.2.7
Plant Species Occurrence in the US and Canada
Description
This dataset, Plants_list, is a list containing data on plant species and the states in the United States and Canada where they occur. The list includes 33,721 plant species entries, each with its corresponding occurrence information. All values are preserved as in the original source, with no modifications.
Usage
data(Plants_list)
Format
A list with 33,721 elements:
- abelia
Species information (character string)
- abelia_x_grandiflora
Species information (character string)
- abelmoschus
Species information (character string)
- ...
Additional species entries omitted for brevity
Details
The dataset name has been kept as 'Plants_list' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The original content has not been modified in any way.
Source
Data taken from the eulerr package version 7.0.2
Plant Occurrence Records
Description
This dataset, Plants_occ, is a data frame containing occurrence records for 7 plant species, including species name and geographic coordinates. The dataset includes 1,658 observations and 3 variables. All values are preserved as in the original source, with no modifications.
Usage
data(Plants_occ)
Format
A data frame with 1,658 observations and 3 variables:
- species
Name of the plant species (character)
- x
Longitude coordinate (numeric)
- y
Latitude coordinate (numeric)
Details
The dataset name has been kept as 'Plants_occ' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The original content has not been modified.
Source
Data taken from the florabr package version 1.3.0
Reptile Species Names and URLs
Description
This dataset, Reptiles_df, is a data frame containing the valid names and URL addresses for all reptile species cataloged in The Reptile Database. The dataset includes 12,440 observations and 8 variables, covering taxonomic order, suborder, family, genus, species, year of description, author, and the URL reference. All values are preserved as in the original source, with no modifications.
Usage
data(Reptiles_df)
Format
A data frame with 12,440 observations and 8 variables:
- order
Taxonomic order (character string)
- suborder
Taxonomic suborder (character string)
- family
Taxonomic family (character string)
- genus
Genus name (character string)
- species
Species name (character string)
- year
Year of species description (character string)
- author
Author(s) of the species description (character string)
- url
URL reference for the species entry (character string)
Details
The dataset name has been kept as 'Reptiles_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified.
Source
Data taken from the letsHerp package version 0.1.0
Savannah River Tree Locations and Species
Description
This dataset, Savannah_trees, is a data frame containing the locations and species classification of trees in a plot in the Savannah River, South Carolina, USA. The dataset includes 734 observations and 4 variables, covering spatial coordinates, tree vitality, and species. All values are preserved as in the original source, with no modifications.
Usage
data(Savannah_trees)
Format
A data frame with 734 observations and 4 variables:
- x
X-coordinate of the tree location (numeric)
- y
Y-coordinate of the tree location (numeric)
- live
Tree vitality indicator (integer)
- sp
Species classification (factor)
Details
The dataset name has been kept as 'Savannah_trees' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The suffix 'df' is not used here because the dataset is identified by its function within BioWorldR. The original content has not been modified.
Source
Data taken from the nnspat package version 0.1.2
Snake Morphological Measurements
Description
This dataset, Snakes_df, is a data frame containing morphological measurements for snakes, including diet (presence of crayfish), sex, snout-vent length (SVL), and teeth count. The dataset includes 200 observations and 4 variables. All values are preserved as in the original source, with no modifications.
Usage
data(Snakes_df)
Format
A data frame with 200 observations and 4 variables:
- Crayfish
Presence of crayfish in diet (character)
- Sex
Sex of the snake (character)
- SVL
Snout-vent length (numeric)
- Teeth
Number of teeth (integer)
Details
The dataset name has been kept as 'Snakes_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified.
Source
Data taken from the SRMData package version 1.0.2
Turtle Temperature-Dependent Sex Determination Data
Description
This dataset, Tsd_turtle, is a data frame containing extensive information on temperature-dependent sex determination (TSD) in reptiles. The dataset includes 2,738 observations and 48 variables, covering species, location, incubation temperatures, egg and hatchling measurements, sex ratios, clutch information, and references. All values are preserved as in the original source, with no modifications.
Usage
data(Tsd_turtle)
Format
A data frame with 2,738 observations and 48 variables:
- Species
Species name (factor)
- Country
Country of observation (factor)
- Area
Specific area or locality (character string)
- Longitude
Longitude of the location (numeric)
- Latitude
Latitude of the location (numeric)
- Subspecies
Subspecies information (character string)
- RMU.2010
RMU code (2010 version) (factor)
- RMU.2023
RMU code (2023 version) (factor)
- Incubation.temperature.set
Incubation temperature set experimentally (numeric)
- Incubation.temperature.recorded
Recorded incubation temperature (numeric)
- Incubation.temperature.corrected
Corrected incubation temperature (numeric)
- Duplicated.data
Indicator for duplicated data (logical)
- Duplicate
Duplicate identifier (character string)
- Incubation.temperature.Constant
Constant temperature indicator (logical)
- Incubation.temperature.Accuracy
Accuracy of incubation temperature (numeric)
- Incubation.temperature.SD
Standard deviation of incubation temperature (numeric)
- Incubation.temperature.Amplitude
Amplitude of incubation temperature (numeric)
- 2ndThird.Incubation.temperature.Amplitude
Amplitude during 2nd/3rd incubation period (numeric)
- Correction.factor
Correction factor applied (numeric)
- Egg.mass.mean
Mean egg mass (numeric)
- Egg.mass.sd
Standard deviation of egg mass (numeric)
- IP.min
Minimum incubation period (numeric)
- IP.max
Maximum incubation period (numeric)
- IP.mean
Mean incubation period (numeric)
- IP.SD
Standard deviation of incubation period (numeric)
- IP.SE
Standard error of incubation period (numeric)
- Length.hatchlings.mean
Mean length of hatchlings (numeric)
- Length.hatchlings.sd
Standard deviation of hatchling length (numeric)
- SCL.hatchlings.mean
Mean straight carapace length of hatchlings (numeric)
- SCL.hatchlings.sd
Standard deviation of hatchling carapace length (numeric)
- Mass.hatchlings.mean
Mean hatchling mass (numeric)
- Mass.hatchlings.sd
Standard deviation of hatchling mass (numeric)
- Total
Total eggs recorded (numeric)
- Hatched
Number of hatched eggs (numeric)
- NotHatched
Number of unhatched eggs (numeric)
- Undeveloped
Number of undeveloped eggs (numeric)
- Unidentified
Number of unidentified eggs (numeric)
- Intersexes
Number of intersex hatchlings (numeric)
- Males
Number of male hatchlings (numeric)
- Females
Number of female hatchlings (numeric)
- Sexed
Number of sexed hatchlings (numeric)
- Number.clutch
Number of clutches observed (numeric)
- Clutch
Clutch identifier (factor)
- Box
Box or container identifier (character string)
- Reference
Reference for the data (character string)
- Note
Additional notes (character string)
- Digital_Identifier
Digital identifier (character string)
- Version
Dataset version (Date)
Details
The dataset name has been kept as 'Tsd_turtle' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The suffix 'df' is not used here because the dataset is identified by its function within BioWorldR. The original content has not been modified.
Source
Data taken from the embryogrowth package version 10.3
Turtle Carapace and Clutch Size Data
Description
This dataset, Turtles_list, is a list containing data to examine the effect of turtle carapace length on clutch size. The list includes three main elements: traits, phylo, and traits_info. All values are preserved as in the original source, with no modifications.
Usage
data(Turtles_list)
Format
A list with 3 elements:
- traits
A tibble with 240 observations and 17 variables, including species, morphometric traits (M1–M5), body measurements (B1–B2), life-history traits (LH1–LH2), and clutch size traits (CS1–CS2)
- phylo
A list of 4 elements containing phylogenetic information (phylo structure)
- traits_info
A data frame with 16 observations and 2 variables: trait_id and trait_name
Details
The dataset name has been kept as 'Turtles_list' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The original content has not been modified in any way.
Source
Data taken from the phylosignalDB package version 0.2.2
Flowering Time Observations
Description
This dataset, flwr_time, is a data frame containing flowering observations for two plant species (Willow and Skypilot), along with minimum temperature and altitude at the observation sites. The dataset includes 25 observations and 4 variables. All values are preserved as in the original source, with no modifications.
Usage
data(flwr_time)
Format
A data frame with 25 observations and 4 variables:
- Willow
Flowering count or observation for Willow (integer)
- Skypilot
Flowering count or observation for Skypilot (integer)
- MinTemp
Minimum temperature at site (numeric)
- Altitude
Altitude of observation site (numeric)
Details
The dataset name has been kept as 'flwr_time' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the BioWorldR package and assists users in identifying its specific characteristics. The original content has not been modified.
Source
Data taken from the SRMData package version 1.0.2
Sparrow Morphological Data
Description
The dataset sparrow_morph was extracted from Hermon Bumpus (1898) and records morphological variables in sparrows that survived or perished after a severe storm. It is one of the earliest examples of a natural selection dataset in ecological studies.
Usage
data(sparrow_morph)
Format
A data frame with 49 observations and 6 variables:
- Survivorship
Survival status of the sparrow (factor with 2 levels: survived or perished)
- Total_length
Total body length (numeric)
- Alar_extent
Wing (alar) extent (numeric)
- L_beak_head
Length from beak to head (numeric)
- L_humerus
Length of humerus (numeric)
- L_keel_sternum
Length of keel of sternum (numeric)
Source
Data extracted from Hermon Bumpus (1898), as reproduced in multiple ecological datasets.