BIGr 0.6.2

• Fixed the doi and name list in the CITATION file

BIGr 0.6.1

• Added new functions for filtering MADC files and converting to relationship matrices
• Added function thinSNPs to thin SNPs based on physical distance
• Added bug fixes and improvements to existing functions

BIGr 0.5.5

• Updated DESCRIPTION
• Added return value for merge_MADCs
• Added optional seed for check_ped
• Added verbose option

BIGr 0.5.4

• Updated dosage2vcf example

BIGr 0.5.3

• Updated madc2vcf_all example

BIGr 0.5.2

• madc2vcf function changed to madc2vcf_targets
• get_OffTargets function changed to madc2vcf_all
• Updates to testthat tests and function examples

BIGr 0.5.1

• Improvements of testthat tests
• Add check_replicates and check_homozygous_trios for pedigree relationship quality check

BIGr 0.5.0

• Add imputation_concordance function to estimate accuracy of imputed and original dataset
• Add get_OffTargets function to extract target and off-target SNPs from a MADC file
• Add merge_MADCs function to merge two or more MADC files together
• Improved documentation and examples for all functions
• Add tests for all functions

BIGr 0.3.3

• Adapt updog2vcf to model f1, f1pp, s1 and s1pp

BIGr 0.3.2

• updog2vcf function option to output compressed VCF (.vcf.gz) - set as default
• remove need for defining ploidy
• add metadata at the VCF header