| graphsim-package | The graphsim package | 
| generate_expression | Generate Simulated Expression | 
| generate_expression_mat | Generate Simulated Expression | 
| graphsim | The graphsim package | 
| make_adjmatrix | Generate Adjacency Matrix | 
| make_adjmatrix_graph | Generate Adjacency Matrix | 
| make_commonlink | Generate Common Link Matrix | 
| make_commonlink_adjmat | Generate Common Link Matrix | 
| make_commonlink_graph | Generate Common Link Matrix | 
| make_distance | Generate Distance Matrix | 
| make_distance_adjmat | Generate Distance Matrix | 
| make_distance_comm | Generate Distance Matrix | 
| make_distance_graph | Generate Distance Matrix | 
| make_distance_laplacian | Generate Distance Matrix | 
| make_laplacian | Generate Laplacian Matrix | 
| make_laplacian_adjmat | Generate Laplacian Matrix | 
| make_laplacian_graph | Generate Laplacian Matrix | 
| make_relationship | Generate Distance Matrix | 
| make_sigma | Generate Sigma (Sigma) Matrix | 
| make_sigma_mat_adjmat | Generate Sigma (Sigma) Matrix | 
| make_sigma_mat_comm | Generate Sigma (Sigma) Matrix | 
| make_sigma_mat_dist_adjmat | Generate Sigma (Sigma) Matrix | 
| make_sigma_mat_dist_graph | Generate Sigma (Sigma) Matrix | 
| make_sigma_mat_graph | Generate Sigma (Sigma) Matrix | 
| make_sigma_mat_laplacian | Generate Sigma (Sigma) Matrix | 
| make_state | Make State Matrix | 
| make_state_matrix | Make State Matrix | 
| Pi3K_AKT_graph | PI3K/AKT activation | 
| Pi3K_graph | PI3K Cascade | 
| plot.directed | Extensions to igraph for Customising plots | 
| plot_directed | Extensions to igraph for Customising plots | 
| RAF_MAP_graph | #' RAF/MAP kinase cascade | 
| TGFBeta_Smad_graph | TGF-beta receptor signaling activates SMADs |