* using log directory 'd:/Rcompile/CRANpkg/local/4.4/PathwaySpace.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'PathwaySpace/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PathwaySpace' version '1.0.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PathwaySpace' can be installed ... WARNING
Found the following significant warnings:
  Note: possible error in 'findInterval(c(i - 0.5, ': unused argument (checkSorted = FALSE) 
See 'd:/Rcompile/CRANpkg/local/4.4/PathwaySpace.Rcheck/00install.out' for details.
Information on the location(s) of code generating the 'Note's can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to 'yes'.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s] NOTE
.find_nn_positions : .find_positions: possible error in
  findInterval(c(i - 0.5, i + 0.5), x_sorted, left.open = TRUE,
  rightmost.closed = TRUE, checkSorted = FALSE): unused argument
  (checkSorted = FALSE)
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [1s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [5s] ERROR
Running examples in 'PathwaySpace-Ex.R' failed
The error most likely occurred in:

> ### Name: circularProjection,PathwaySpace-method
> ### Title: Spatial Projection of Graph-Associated Signals
> ### Aliases: circularProjection,PathwaySpace-method circularProjection
> 
> ### ** Examples
> 
> # Load a demo igraph
> data('gtoy1', package = 'RGraphSpace')
> 
> # Create a new PathwaySpace object
> ps <- buildPathwaySpace(gtoy1, nrc = 100)
Validating arguments...
Validating the 'igraph' object...
Creating a 'PathwaySpace' object...
> # note: adjust 'nrc' to increase image resolution
> 
> # Set '1s' as vertex signal
> vertexSignal(ps) <- 1
> 
> # Create a 2D-landscape image
> ps <- circularProjection(ps)
Validating arguments...
Using circular projection...
Mapping 'x' and 'y' coordinates...
Running signal convolution...
Error in findInterval(c(i - 0.5, i + 0.5), x_sorted, left.open = TRUE,  : 
  unused argument (checkSorted = FALSE)
Calls: circularProjection ... .find_nn_positions -> lapply -> FUN -> .find_positions
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [3s] OK
  Running 'testthat.R' [3s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [11s] OK
* checking PDF version of manual ... [19s] OK
* checking HTML version of manual ... [5s] OK
* DONE
Status: 1 ERROR, 1 WARNING, 1 NOTE