* using log directory 'd:/Rcompile/CRANpkg/local/4.6/invitroTKstats.Rcheck' * using R Under development (unstable) (2025-09-03 r88788 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'invitroTKstats/DESCRIPTION' ... OK * this is package 'invitroTKstats' version '0.0.13' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'invitroTKstats' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... 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OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [2s] ERROR Running examples in 'invitroTKstats-Ex.R' failed The error most likely occurred in: > ### Name: calc_clint_point > ### Title: Calculate a Point Estimate of Intrinsic Hepatic Clearance > ### (Clint) (Level-3) > ### Aliases: calc_clint_point > > ### ** Examples > > ## Load example level-2 data > level2 <- invitroTKstats::clint_L2 > > ## scenario 1: > ## input level-2 data from the R session and do not export the result table > level3 <- calc_clint_point(data.in = level2, output.res = FALSE) Error in UseMethod("logLik") : no applicable method for 'logLik' applied to an object of class "mle" Calls: calc_clint_point -> AIC -> AIC -> AIC.default -> ll Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [53s] ERROR Error(s) in re-building vignettes: --- re-building 'Appendix_vignette.Rmd' using rmarkdown --- finished re-building 'Appendix_vignette.Rmd' --- re-building 'Caco2_vignette.Rmd' using rmarkdown --- finished re-building 'Caco2_vignette.Rmd' --- re-building 'Clint_vignette.Rmd' using rmarkdown Quitting from Clint_vignette.Rmd:405-410 [L3 processing] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `UseMethod()`: ! no applicable method for 'logLik' applied to an object of class "mle" --- Backtrace: ▆ 1. └─invitroTKstats::calc_clint_point(...) 2. ├─stats::AIC(this.null) 3. ├─stats::AIC(this.null) 4. └─stats:::AIC.default(this.null) 5. └─stats (local) ll(object) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Clint_vignette.Rmd' failed with diagnostics: no applicable method for 'logLik' applied to an object of class "mle" --- failed re-building 'Clint_vignette.Rmd' --- re-building 'Data-guide-and-L0_vignette.Rmd' using rmarkdown --- finished re-building 'Data-guide-and-L0_vignette.Rmd' --- re-building 'FupRED_vignette.Rmd' using rmarkdown --- finished re-building 'FupRED_vignette.Rmd' --- re-building 'FupUC_vignette.Rmd' using rmarkdown --- finished re-building 'FupUC_vignette.Rmd' --- re-building 'plotting-invitroTKstats.Rmd' using rmarkdown --- finished re-building 'plotting-invitroTKstats.Rmd' SUMMARY: processing the following file failed: 'Clint_vignette.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [23s] OK * checking HTML version of manual ... [15s] OK * DONE Status: 2 ERRORs