* using log directory 'd:/Rcompile/CRANpkg/local/4.6/ProjectTemplate.Rcheck' * using R Under development (unstable) (2025-08-09 r88550 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'ProjectTemplate/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ProjectTemplate' version '0.11.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ProjectTemplate' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s] OK * checking Rd files ... [2s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [2s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [108s] ERROR Running 'run-all.R' [54s] Running 'testthat.R' [54s] Running the tests in 'tests/run-all.R' failed. Complete output: > library(testthat) > > test_check("ProjectTemplate") Loading required package: ProjectTemplate Loading required package: digest Loading required package: tibble Project name: test_project28d844c67e24 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project28d846e80268b Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project28d846e71311 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project28d846e71311 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project28d846e71311 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project28d8441e47def Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project28d8462966756 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project28d8462966756 Clearing cache for project: test_project28d84243aa31 Objects to clear from memory: xxx Project name: test_project28d84243aa31 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project28d848854ab7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28d848854ab7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project28d846c1523e0 Project name: test_project28d8440845fa0 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28d8433bf20a4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Directory: test_project28d842b36674 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project28d842b36674 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project228d8474325cbb is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file28d84ea1787c helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project28d8468ad2ade Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project28d847f335db3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project28d847206196f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28d847206196f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project28d843b162ab2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28d843b162ab2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project28d841e074156 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28d841e074156 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project28d8426278e7 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project28d84a403e78 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28d84a403e78 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project28d8454b367ba Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28d8454b367ba Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project28d84331f6160 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28d84331f6160 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project28d8487165c5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28d8487165c5 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project28d846f0818a2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28d846f0818a2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project28d842a843f74 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project28d84e6b3a6a Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28d8448637b54 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project28d847d1f6a6 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ProjectTemplate) Loading required package: digest Loading required package: tibble > > test_check("ProjectTemplate") Project name: test_project16334149d3cc9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1633415a15c8c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project16334187113fa Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project16334187113fa version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project16334187113fa version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project1633441234a5d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project163344ca44f1a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project163344ca44f1a Clearing cache for project: test_project16334474915a9 Objects to clear from memory: xxx Project name: test_project16334474915a9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project16334513272c9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project16334513272c9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project1633412bb48d5 Project name: test_project163341f8a629e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project163343efdee1 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Directory: test_project163348871e35 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project163348871e35 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project216334515b2753 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file16334156832aa helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project163346bc72b48 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project1633418ef43ef Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project1633442b844c4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1633442b844c4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project16334136b672d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project16334136b672d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1633452fe44ed Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1633452fe44ed Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project16334432677d2 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1633411176448 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1633411176448 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project1633478dc5431 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1633478dc5431 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project1633437a69d9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1633437a69d9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project163345f7c5845 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project163345f7c5845 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project163343b0b2f71 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project163343b0b2f71 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project1633455eb156a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project163342bbe2e0f Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1633468f863af Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project1633432ea6400 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted * checking PDF version of manual ... [22s] OK * checking HTML version of manual ... [10s] OK * DONE Status: 1 ERROR