Package: popkin
Title: Estimate Kinship and FST under Arbitrary Population Structure
Version: 1.3.23
Authors@R: c(
    person(given = "Alejandro",
	   family = "Ochoa",
	   role = c("aut", "cre"),
	   email = "alejandro.ochoa@duke.edu",
           comment = c(ORCID = "0000-0003-4928-3403")),
    person(given = "John D.",
           family = "Storey",
	   role = c("aut"),
	   email = "jstorey@princeton.edu",
           comment = c(ORCID = "0000-0001-5992-402X"))
    )
Description: Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index).  Method described in Ochoa and Storey (2021) <doi:10.1371/journal.pgen.1009241>.
LazyData: true
Depends: R (>= 3.5.0)
Imports: RColorBrewer, graphics, grDevices, ape
Suggests: BEDMatrix, testthat, knitr, rmarkdown, bnpsd
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.3
VignetteBuilder: knitr
URL: https://github.com/StoreyLab/popkin/
BugReports: https://github.com/StoreyLab/popkin/issues
NeedsCompilation: no
Packaged: 2023-01-06 23:37:19 UTC; viiia
Author: Alejandro Ochoa [aut, cre] (<https://orcid.org/0000-0003-4928-3403>),
  John D. Storey [aut] (<https://orcid.org/0000-0001-5992-402X>)
Maintainer: Alejandro Ochoa <alejandro.ochoa@duke.edu>
Repository: CRAN
Date/Publication: 2023-01-07 00:30:02 UTC
Built: R 4.6.0; ; 2025-10-14 02:08:56 UTC; windows
