are_mhcnuggets_names    Are these MHCnuggets names?
check_mhc_class         Check the MHC class.
check_mhcnuggets_installation
                        Check if MHCnuggets is installed.
check_mhcnuggets_options
                        Check the MHCnuggets options.
check_mhcnuggets_options_names
                        Check the names of the elements in an
                        'mhcnuggets_options' list.
create_mhcnuggets_options
                        Create a set of MHCnuggets options.
create_temp_peptides_path
                        Create a path to a non-existing temporary file
create_test_mhcnuggets_options
                        Create testing options for MHCnuggets
default_params_doc      This function does nothing. It is intended to
                        inherit the documentation of the parameters
                        from.
downgrade_pip           Downgrade pip.
get_default_mhcnuggets_folder
                        Get the path to the folder where this package
                        installs MHCnuggets by default
get_example_filename    Get the full path to an MHCnuggets example file
get_example_filenames   Get the full path to all MHCnuggets example
                        files
get_mhc_1_haplotypes    Get all the MHC-I haplotypes
get_mhc_2_haplotypes    Get all the MHC-II haplotypes
get_mhcnuggets_url      Get the URL of the MHCnuggets source code
get_mhcnuggets_version
                        Get the MHCnuggets version
get_pip_version         Get the version of pip
get_python_package_versions
                        Get the version of all Python packages
get_trained_mhc_1_haplotypes
                        Get all the MHC-I haplotypes that have been
                        trained on a model
get_trained_mhc_2_haplotypes
                        Get all the MHC-II haplotypes that have been
                        trained on a model
install_mhcnuggets      Install the 'MHCnuggets' 'Python' package.
install_pip             Install pip.
is_mhcnuggets_installed
                        Check if MHCnuggets is installed
is_mhcnuggets_name      Is this an MHCnuggets name?
is_mhcnuggets_options   Is this a 'mhcnuggets_options'?
is_on_appveyor          Determines if the environment is AppVeyor
is_on_ci                Determines if the environment is a continuous
                        integration service
is_on_travis            Determines if the environment is Travis CI
is_pip_installed        Determine if pip is installed
mhcnuggetsr             mhcnuggetsr: estimate the topoplogy of membrane
                        proteins
mhcnuggetsr_report      Create a mhcnuggetsr report, to be used when
                        reporting bugs
mhcnuggetsr_self_test   Self-test the package
predict_ic50            Predict the IC50 for peptides.
predict_ic50_from_file
                        Predict the half maximal inhibitory
                        concentration (aka IC50) (in nM) for one or
                        more peptides as saved in a file. Each peptide
                        must be 15 amino acids at most (use
                        predict_ic50s to predict the IC50s for longer
                        peptides)
predict_ic50s           Predict the half maximal inhibitory
                        concentrations (aka IC50s) (in nM) of all
                        possible n-mers within a peptide
set_is_mhcnuggets_installed
                        Set the MHCnuggets installation state to the
                        desired one
set_pip_version         Set the version of pip.
to_mhcnuggets_name      Convert a standard haplotype name to the
                        MHCnuggets name
to_mhcnuggets_names     Convert one or more standard haplotype name to
                        the MHCnuggets names
uninstall_mhcnuggets    Uninstall the MHCnuggets Python package.
uninstall_pip           Install pip.
upgrade_pip             Uograde pip.
