# Generated by roxygen2: do not edit by hand

export("barcodeProbe<-")
export("grnaProbe<-")
export(.TapestriExperiment)
export(PCAKneePlot)
export(assayBoxPlot)
export(assayHeatmap)
export(barcodeProbe)
export(calcCopyNumber)
export(calcGMMCopyNumber)
export(calcNormCounts)
export(calcSmoothCopyNumber)
export(callSampleLables)
export(corner)
export(countBarcodedReads)
export(countBarcodedReadsFromContig)
export(createTapestriExperiment)
export(generateControlCopyNumberTemplate)
export(getChrOrder)
export(getCytobands)
export(getGMMBoundaries)
export(getTidyData)
export(gmmParams)
export(grnaProbe)
export(moveNonGenomeProbes)
export(newTapestriExperimentExample)
export(plotCopyNumberGMM)
export(reducedDimPlot)
export(runClustering)
export(runPCA)
export(runUMAP)
exportClasses(TapestriExperiment)
exportMethods("barcodeProbe<-")
exportMethods("grnaProbe<-")
exportMethods(barcodeProbe)
exportMethods(gmmParams)
exportMethods(grnaProbe)
exportMethods(show)
import(SingleCellExperiment)
import(ggplot2)
import(methods)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(magrittr,"%>%")
importFrom(rlang,.data)
importFrom(stats,median)
importFrom(stats,rnorm)
importFrom(stats,sd)
importMethodsFrom(SingleCellExperiment,show)
