DNAseq                  Build a DNAseq object from a DNA sequence
                        string.
aa_check                Translate the sequence and it for stop codons
adjust                  Adjust the sequences based on the nt path
                        outputs.
censored_translation    Censored Translation of a DNA string.
consensus               Take the list of denoised sequences and obtain
                        the consensus sequence.
debar                   'debar'
denoise                 Run the denoiser pipeline for a sequence read.
denoise_file            Denoise sequence data from a given file.
denoise_list            List-to-list denoising of COI barcode
                        sequences.
dir_check               Take an input sequence and align both the
                        forward and reverse compliments to the PHMM
ex_nt_list              An example of a list of four coi5p sequences,
                        each containing indel errors.
example_nt_string       Example coi5p DNA sequence string.
example_nt_string_errors
                        Example coi5p DNA sequence string with
                        insertion and deletion errors.
frame                   Take a DNAseq object and isolate the COI-5P
                        region.
outseq                  Get the final denoised output sequence for a
                        read.
read_fasta              Read in raw data from a fasta file.
read_fastq              Read in raw data from a fastq file.
write_fasta             Output the denoised consensus sequence to a
                        fasta file.
write_fastq             Output the denoised sequence to a fastq format
                        with placeholder phred scores.
