Claddis-package	Claddis-package
align_matrix_block	align_matrix_block
assign_taxa_to_bins	assign_taxa_to_bins
bin_changes	bin_changes
bin_character_completeness	bin_character_completeness
bin_edge_lengths	bin_edge_lengths
build_cladistic_matrix	build_cladistic_matrix
calculate_morphological_distances	calculate_morphological_distances
Claddis	Claddis-package
compactify_matrix	compactify_matrix
date_nodes	date_nodes
day_2016	day_2016
estimate_ancestral_states	estimate_ancestral_states
find_descendant_edges	find_descendant_edges
find_linked_edges	find_linked_edges
find_minimum_spanning_edges	find_minimum_spanning_edges
find_mrca	find_mrca
fix_root_time	fix_root_time
gauthier_1986	gauthier_1986
map_dollo_changes	map_dollo_changes
map_stochastic_changes	map_stochastic_changes
match_tree_edges	match_tree_edges
michaux_1989	michaux_1989
ordinate_cladistic_matrix	ordinate_cladistic_matrix
partition_time_bins	partition_time_bins
plot_changes_on_tree	plot_changes_on_tree
plot_chronophylomorphospace	plot_chronophylomorphospace
plot_morphospace	plot_morphospace
plot_morphospace_stack	plot_morphospace_stack
plot_multi_morphospace	plot_multi_morphospace
plot_rates_character	plot_rates_character
plot_rates_time	plot_rates_time
plot_rates_tree	plot_rates_tree
print.cladisticMatrix	print.cladisticMatrix
prune_cladistic_matrix	prune_cladistic_matrix
read_nexus_matrix	read_nexus_matrix
safe_taxonomic_reduction	safe_taxonomic_reduction
safe_taxonomic_reinsertion	safe_taxonomic_reinsertion
test_rates	test_rates
trim_marginal_whitespace	trim_marginal_whitespace
trim_matrix	trim_matrix
write_nexus_matrix	write_nexus_matrix
write_tnt_matrix	write_tnt_matrix
