Package: MDMAPR
Type: Package
Title: Molecular Detection Mapping and Analysis Platform
Version: 0.2.3
Author: Alka Benawra <alkabenawra@rogers.com>
Maintainer: Alka Benawra <alkabenawra@rogers.com>
Description: Runs a Shiny web application that merges raw 'qPCR' fluorescence data with related 
    metadata to visualize species presence/absence detection patterns and assess data quality. 
    The application calculates threshold values from raw fluorescence data using a method based 
    on the second derivative method, Luu-The et al (2005) <doi:10.2144/05382RR05>,  and utilizes 
    the ‘chipPCR’ package by Rödiger, Burdukiewicz, & Schierack (2015) <doi:10.1093/bioinformatics/btv205> 
    to calculate Cq values. The application has the ability to connect to a custom developed MySQL 
    database to populate the applications interface. The application allows users to interact with 
    visualizations such as a dynamic map, amplification curves and standard curves, that allow for 
    zooming and/or filtering. It also enables the generation of customized exportable reports based
    on filtered mapping data. 
License: GPL-3
Encoding: UTF-8
Imports: RMySQL, shinydashboard, DBI, DT, leaflet, leaflet.extras,
        shinyjs, ggplot2, dplyr, readxl, plotly, reactable, writexl,
        xfun, berryFunctions, shinyWidgets, shiny, htmltools, methods,
        utils, stats, bslib, htmlwidgets
RoxygenNote: 7.1.1
URL: https://github.com/HannerLab/MDMAPR
BugReports: https://github.com/HannerLab/MDMAPR/issues
NeedsCompilation: no
Packaged: 2021-06-22 22:12:56 UTC; alkabenawra
Repository: CRAN
Date/Publication: 2021-06-23 04:20:07 UTC
Built: R 4.0.5; ; 2022-04-21 13:54:11 UTC; windows
