BQ                      Call peaks in replicated ChIP-seq data using
                        BinQuasi
BinQuasi                Analyzing Replicated ChIP Sequencing Data Using
                        Quasi-Likelihood
NBDev                   Fit a negative binomial GLM for a given design
                        matrix
PoisDev                 Compute Poisson deviances for a given design
                        matrix
QL.fit                  Fit quasi-likelihood models to replicated
                        ChIP-seq data partitioned into a count matrix
QL.results              Obtain p- and q-values using results from
                        'QL.fit'
call.peaks              Call peaks from a list of window-level p-values
coef.glm                Extract model coefficients
count.table             Create a matrix of ChIP-seq count data
