shinyMethylData
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see shinyMethylData.
Example dataset of input data for shinyMethyl
Bioconductor version: 3.17
Extracted data from 369 TCGA Head and Neck Cancer DNA methylation samples. The extracted data serve as an example dataset for the package shinyMethyl. Original samples are from 450k methylation arrays, and were obtained from The Cancer Genome Atlas (TCGA). 310 samples are from tumor, 50 are matched normals and 9 are technical replicates of a control cell line.
Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]
Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>
citation("shinyMethylData")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("shinyMethylData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData, Genome |
| Version | 1.20.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | shinyMethyl |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | shinyMethylData_1.20.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/shinyMethylData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/shinyMethylData |
| Package Short Url | https://bioconductor.org/packages/shinyMethylData/ |
| Package Downloads Report | Download Stats |