msd16s
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see msd16s.
Healthy and moderate to severe diarrhea 16S expression data
Bioconductor version: 3.17
Gut 16S sequencing expression data from 992 healthy and moderate-to-severe diarrhetic samples used in 'Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition'.
Author: Joseph N. Paulson, Hector Corrada Bravo, Mihai Pop
Maintainer: Joseph N. Paulson <jpaulson at umiacs.umd.edu>
citation("msd16s")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("msd16s")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("msd16s")| msd16s | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, MicrobiomeData, SequencingData |
| Version | 1.20.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), Biobase, metagenomeSeq |
| Imports | |
| System Requirements | |
| URL | http://www.cbcb.umd.edu/research/projects/GEMS-pathogen-discovery |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | metavizr, scTreeViz |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | msd16s_1.20.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/msd16s |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/msd16s |
| Package Short Url | https://bioconductor.org/packages/msd16s/ |
| Package Downloads Report | Download Stats |