davidTiling

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see davidTiling.

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Bioconductor version: 3.17

This package contains the data for the paper by L. David et al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix genechips, an ExpressionSet object with the raw feature data, a probe annotation data structure for the chip and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory.

Author: Wolfgang Huber <huber at ebi.ac.uk>, Joern Toedling <toedling at ebi.ac.uk>

Maintainer: Wolfgang Huber <huber at ebi.ac.uk>

Citation (from within R, enter citation("davidTiling")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("davidTiling")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, Genome, MicroarrayData, ReproducibleResearch, Saccharomyces_cerevisiae_Data
Version	1.40.0
License	LGPL
Depends	R (>= 2.10), Biobase(>= 2.5.5), tilingArray, GO.db
Imports
System Requirements
URL	http://www.ebi.ac.uk/huber

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	davidTiling_1.40.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/davidTiling
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/davidTiling
Package Short Url	https://bioconductor.org/packages/davidTiling/
Package Downloads Report	Download Stats