chipseqDBData
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see chipseqDBData.
Data for the chipseqDB Workflow
Bioconductor version: 3.17
Sorted and indexed BAM files for ChIP-seq libraries, for use in the chipseqDB workflow. BAM indices are also included.
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
Citation (from within R, enter
citation("chipseqDBData")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("chipseqDBData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chipseqDBData")| File manifest and statistics | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ChIPSeqData, ExperimentData, ExperimentHub, SequencingData |
| Version | 1.16.0 |
| License | CC BY 4.0 |
| Depends | |
| Imports | AnnotationHub, ExperimentHub, Rsamtools, S4Vectors |
| System Requirements | |
| URL |
See More
| Suggests | knitr, BiocStyle, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | csawBook |
| Imports Me | |
| Suggests Me | chipseqDB |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | chipseqDBData_1.16.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/chipseqDBData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/chipseqDBData |
| Package Short Url | https://bioconductor.org/packages/chipseqDBData/ |
| Package Downloads Report | Download Stats |