bodymapRat

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see bodymapRat.

Experimental dataset from the rat BodyMap project

Bioconductor version: 3.17

This package contains a SummarizedExperiment from the Yu et al. (2013) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. Raw FASTQ files were downloaded and mapped using STAR. Data is available on ExperimentHub as a data package.

Author: Stephanie Hicks [aut, cre] , Kwame Okrah [aut]

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("bodymapRat")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bodymapRat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bodymapRat")

The bodymapRat data user's guide	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData
Version	1.16.0
License	CC BY 4.0
Depends	R (>= 3.6.0), SummarizedExperiment, ExperimentHub
Imports	utils
System Requirements
URL

Suggests	rmarkdown, knitr, BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	qsmooth
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bodymapRat_1.16.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/bodymapRat
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bodymapRat
Package Short Url	https://bioconductor.org/packages/bodymapRat/
Package Downloads Report	Download Stats