NGScopyData
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see NGScopyData.
Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package
Bioconductor version: 3.17
Subset of BAM files of human lung tumor and pooled normal samples by targeted panel sequencing. [Zhao et al 2014. Targeted Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using the University of North Carolina (UNC) Sequencing Assay Captures Most Previously Described Genetic Aberrations in NSCLC. In preparation.] Each sample is a 10 percent random subsample drawn from the original sequencing data. The pooled normal sample has been rescaled accroding to the total number of normal samples in the "pool". Here provided is the subsampled data on chr6 (hg19).
Author: Xiaobei Zhao [aut, cre, cph]
Maintainer: Xiaobei Zhao <xiaobei at binf.ku.dk>
citation("NGScopyData")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("NGScopyData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData, LungCancerData, SequencingData |
| Version | 1.20.0 |
| License | GPL (>=2) |
| Depends | |
| Imports | |
| System Requirements | |
| URL | http://www.bioconductor.org/packages/release/data/experiment/html/NGScopyData.html |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | NGScopyData_1.20.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/NGScopyData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/NGScopyData |
| Package Short Url | https://bioconductor.org/packages/NGScopyData/ |
| Package Downloads Report | Download Stats |