BeadSorted.Saliva.EPIC

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see BeadSorted.Saliva.EPIC.

Illumina EPIC data on BeadSorted child saliva cells

Bioconductor version: 3.17

Raw data objects used to estimate saliva cell proportion estimates in ewastools. The FlowSorted.Saliva.EPIC object is constructed from samples assayed by Lauren Middleton et. al. (2021).

Author: Jonah Fisher [aut, cre], Kelly Bakulski [aut], Lauren Middleton [aut]

Maintainer: Jonah Fisher <jazzfish at umich.edu>

Citation (from within R, enter citation("BeadSorted.Saliva.EPIC")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BeadSorted.Saliva.EPIC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BeadSorted.Saliva.EPIC")

BeadSorted.Saliva.EPIC.html	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version	1.8.0
License	GPL-3
Depends	R (>= 4.1), minfi(>= 1.36.0), ExperimentHub
Imports
System Requirements
URL

Suggests	knitr, rmarkdown
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BeadSorted.Saliva.EPIC_1.8.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/BeadSorted.Saliva.EPIC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BeadSorted.Saliva.EPIC
Package Short Url	https://bioconductor.org/packages/BeadSorted.Saliva.EPIC/
Package Downloads Report	Download Stats