sparseMatrixStats
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see sparseMatrixStats.
Summary Statistics for Rows and Columns of Sparse Matrices
Bioconductor version: 3.17
High performance functions for row and column operations on sparse matrices. For example: col / rowMeans2, col / rowMedians, col / rowVars etc. Currently, the optimizations are limited to data in the column sparse format. This package is inspired by the matrixStats package by Henrik Bengtsson.
Author: Constantin Ahlmann-Eltze [aut, cre]
Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>
citation("sparseMatrixStats")
):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sparseMatrixStats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sparseMatrixStats")
sparseMatrixStats | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DataRepresentation, Infrastructure, Software |
Version | 1.12.2 |
In Bioconductor since | BioC 3.11 (R-4.0) (4 years) |
License | MIT + file LICENSE |
Depends | MatrixGenerics(>= 1.5.3) |
Imports | Rcpp, Matrix, matrixStats (>= 0.60.0), methods |
System Requirements | C++11 |
URL | https://github.com/const-ae/sparseMatrixStats |
Bug Reports | https://github.com/const-ae/sparseMatrixStats/issues |
See More
Suggests | testthat (>= 2.1.0), knitr, bench, rmarkdown, BiocStyle |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | atena, DelayedMatrixStats, GSVA, SimBu |
Suggests Me | MatrixGenerics, scPCA |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | sparseMatrixStats_1.12.2.tar.gz |
Windows Binary | sparseMatrixStats_1.12.2.zip |
macOS Binary (x86_64) | sparseMatrixStats_1.12.2.tgz |
macOS Binary (arm64) | sparseMatrixStats_1.12.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/sparseMatrixStats |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sparseMatrixStats |
Bioc Package Browser | https://code.bioconductor.org/browse/sparseMatrixStats/ |
Package Short Url | https://bioconductor.org/packages/sparseMatrixStats/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.17 | Source Archive |