rBiopaxParser

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see rBiopaxParser.

Parses BioPax files and represents them in R

Bioconductor version: 3.17

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <frank.kramer at informatik.uni-augsburg.de>

Citation (from within R, enter citation("rBiopaxParser")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rBiopaxParser")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rBiopaxParser")

biocViews	DataRepresentation, Software
Version	2.40.0
In Bioconductor since	BioC 2.12 (R-3.0) (11 years)
License	GPL (>= 2)
Depends	R (>= 4.0), data.table
Imports	XML
System Requirements
URL	https://github.com/frankkramer-lab/rBiopaxParser

Suggests	Rgraphviz, RCurl, graph, RUnit, BiocGenerics, RBGL, igraph
Linking To
Enhances
Depends On Me
Imports Me	pwOmics
Suggests Me	AnnotationHub, NetPathMiner
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	rBiopaxParser_2.40.0.tar.gz
Windows Binary	rBiopaxParser_2.40.0.zip (64-bit only)
macOS Binary (x86_64)	rBiopaxParser_2.40.0.tgz
macOS Binary (arm64)	rBiopaxParser_2.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rBiopaxParser
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rBiopaxParser
Bioc Package Browser	https://code.bioconductor.org/browse/rBiopaxParser/
Package Short Url	https://bioconductor.org/packages/rBiopaxParser/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive