goSorensen
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see goSorensen.
Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)
Bioconductor version: 3.17
This package implements inferential methods to compare gene lists (in this first release, to prove equivalence) in terms of their biological meaning as expressed in the GO. The compared gene lists are characterized by cross-tabulation frequency tables of enriched GO items. Dissimilarity between gene lists is evaluated using the Sorensen-Dice index. The fundamental guiding principle is that two gene lists are taken as similar if they share a great proportion of common enriched GO items.
Author: Pablo Flores [aut, cre] 
, Jordi Ocana [aut, ctb] (0000-0002-4736-699), Alexandre Sanchez-Pla [ctb] , Miquel Salicru [ctb]
Maintainer: Pablo Flores <p_flores at espoch.edu.ec>
citation("goSorensen")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("goSorensen")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("goSorensen")| An introduction to equivalence test between feature lists using goSorensen. | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, Clustering, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Microarray, MultipleComparison, Pathways, Reactome, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.16 (R-4.2) (1.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.2.0) |
| Imports | GO.db, org.Hs.eg.db, goProfiles, stats, clusterProfiler, parallel |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | goSorensen_1.2.0.tar.gz |
| Windows Binary | goSorensen_1.2.0.zip (64-bit only) |
| macOS Binary (x86_64) | goSorensen_1.2.0.tgz |
| macOS Binary (arm64) | goSorensen_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/goSorensen |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/goSorensen |
| Bioc Package Browser | https://code.bioconductor.org/browse/goSorensen/ |
| Package Short Url | https://bioconductor.org/packages/goSorensen/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |