gcrma

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see gcrma.

Background Adjustment Using Sequence Information

Bioconductor version: 3.17

Background adjustment using sequence information

Author: Jean(ZHIJIN) Wu, Rafael Irizarry with contributions from James MacDonald <jmacdon at med.umich.edu> Jeff Gentry

Maintainer: Z. Wu <zwu at stat.brown.edu>

Citation (from within R, enter citation("gcrma")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gcrma")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gcrma")

biocViews	Microarray, OneChannel, Preprocessing, Software
Version	2.72.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 19 years)
License	LGPL
Depends	R (>= 2.6.0), affy(>= 1.23.2), graphics, methods, stats, utils
Imports	Biobase, affy(>= 1.23.2), affyio(>= 1.13.3), XVector, Biostrings(>= 2.11.32), splines, BiocManager
System Requirements
URL

Suggests	affydata, tools, splines, hgu95av2cdf, hgu95av2probe
Linking To
Enhances
Depends On Me	affyILM, affyPLM, bgx, maPredictDSC, maskBAD, webbioc
Imports Me	affycoretools, affylmGUI
Suggests Me	panp
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	gcrma_2.72.0.tar.gz
Windows Binary	gcrma_2.72.0.zip
macOS Binary (x86_64)	gcrma_2.72.0.tgz
macOS Binary (arm64)	gcrma_2.72.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gcrma
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gcrma
Bioc Package Browser	https://code.bioconductor.org/browse/gcrma/
Package Short Url	https://bioconductor.org/packages/gcrma/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive